Hi, Have a question regarding the mri_label2label function. Trying to test it for a subject (called "temp"). It seems to exit on writing the label file in the subject folder. There should not be any problems with the write permissions. Any idea? This is what I get (from command line):
------------------------------------------------------------------ [ceci...@rossetti ~]$ mri_label2label --srclabel /home/Cecilie/cpi_cortex/old_study/Labels/wais_doss_vs_diff_lh_stg.label --srcsubject avg_hubin --trgsubject temp --trglabel temp/label/wais_doss_vs_diff_lh_stg.label --regmethod surface --srchemi lh --trghemi lh srclabel = /home/Cecilie/cpi_cortex/old_study/Labels/wais_doss_vs_diff_lh_stg.label srcsubject = avg_hubin trgsubject = temp trglabel = temp/label/wais_doss_vs_diff_lh_stg.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 SUBJECTS_DIR is /home/Cecilie/subjects FREESURFER_HOME is /usr/local/freesurfer_3.0.2 Loading source label. Found 21245 points in source label. Starting surface-based mapping Reading source registration /home/Cecilie/subjects/avg_hubin/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /home/Cecilie/subjects/temp/surf/lh.white Reading target registration /home/Cecilie/subjects/temp/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). INFO: found 21245 nlabel points Performing mapping from target back to the source label Building source registration hash (res=16). Number of reverse mapping hits = 3907 Checking for and removing duplicates Writing label file temp/label/wais_doss_vs_diff_lh_stg.label LabelWrite: saving to temp/label/wais_doss_vs_diff_lh_stg.label mri_label2label: could not open label file temp/label/wais_doss_vs_diff_lh_stg.label No such file or directory ERROR: writing label file mri_label2label: Done ----------------------------------------------------------------- Petr _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
