Hi Judith, Yes thickness. The MAX indicates the maximum -log10(pvalue) in that cluster.
> Hi all. After looking over our monte-carlo results, I a simple question > about the sig.cluster.summary output. > > Is the " Max" in column 2 below a measurement of thickness? > thickness, is the correct interpretation the following: the most > significant > cluster is in the laterorbitofrontal region. yes at lateral orbital frontal. The max vertex in that > cluster > has an average thickness of 3.312 mm and the negative directionality > indicates that it is thinner in that region than in the fsaverage (from > freesufer) used in the group analysis/simulations? yes you are correct. > If it does not refer to thickness, is it a statistic, etc? > > # Minimum Threshold 2 > # Maximum Threshold infinity > # Threshold Sign abs > # AdjustThreshWhenOneTail 1 > # Area Threshold 0 mm^2 > # CSD thresh 2.000000 > # CSD nreps 10000 > # CSD simtype mc-z > # CSD contrast lh-Avg-thickness-CAQ-CCI > # CSD confint 90.000000 > # Overall max 2.05497 at vertex 92846 > # Overall min -3.3122 at vertex 60632 > # NClusters 11 > # Total Cortical Surface Area 65416.6 (mm^2) > # FixMNI = 1 > # > # ClusterNo Max VtxMax Size(mm^2) TalX TalY TalZ CWP > CWPLow CWPHi NVtxs Annot > 1 -3.312 60632 278.00 -15.2 47.7 -15.4 0.08250 > 0.07900 0.08600 341 lateralorbitofrontal > 2 -3.231 51202 118.54 -39.5 24.9 16.9 0.53620 > 0.52980 0.54260 212 rostralmiddlefrontal > 3 -3.229 67407 163.06 -19.2 12.0 46.9 0.36360 > 0.35740 0.36980 337 superiorfrontal > 4 -2.463 117667 37.51 -47.8 -50.8 8.0 0.63240 > 0.62620 0.63860 79 bankssts > 5 -2.379 151243 12.92 -30.9 -42.8 36.6 0.63240 > 0.62620 0.63860 38 superiorparietal > > I am trying to finish writing up my results and just need answer to this > question to continue. > > Thanks, > > Judith S. > Mind Research Network > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
