hmm, this almost never fails anymore. What does the aseg look like? Did
it label things correctly? Is the skull stripping ok?
Bruce
On Mon, 18 May 2009,
Falk Lüsebrink wrote:
Hi FreeSurfers,
At the end of mri_fill Im told to check the filled volume as the cerebellum
may be included. It is and also the brainstem. But actually I dont know
how to fix this. Do I need to include the seed points for cc and pons for
better cutting planes? Do I need to manually edit the volume?
If the latter is better are there any other tools available besides tkmedit?
If I try to add or delete voxels of a high resolution volume tkmedit seems
to skin every second slice.
Regards,
Falk
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