Hi FreeSurfers,

 

At the end of mri_fill I’m told to check the filled volume as the cerebellum
may be included. It is and also the brainstem. But  actually I don’t know
how to fix this. Do I need to include the seed points for cc and pons for
better cutting planes? Do I need to manually edit the volume?

 

If the latter is better are there any other tools available besides tkmedit?
If I try to add or delete voxels of a high resolution volume tkmedit seems
to skin every second slice.

 

Regards,

Falk

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