try the slicer software. there are options to do what you want directly with FS data
--- On Tue, 3/17/09, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: From: Douglas N Greve <gr...@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] 3D visualization of subcortical volumes To: "Alexa Nardelli" <ale...@ualberta.ca> Cc: freesurfer@nmr.mgh.harvard.edu Date: Tuesday, March 17, 2009, 12:50 PM You can use the FS MRIread.m command to read in mgz volumes. doug Alexa Nardelli wrote: > Hi, > > I have used FreeSurfer volumetrics to obtain various volumes of some subcortical structures. I would like to obtain a 3D image of each of these subcortical structures. I have tried importing the volumes into Matlab, however Matlab doesn't recognize the mgz file. Any suggestions on how I could go about doing this? > > Thanks, > > Alexa > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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