Hi Dough, this data were analyzed using 4.0.4. So indeed it not the latest, which I am running normally. From which version has this been fixed, so I can check, before re-runing. From which point should I rerun the analysis.
Thanks, Martin On Monday 06 April 2009 18:42:36 Douglas N Greve wrote: > This looks like a problem we had with an older version. What version of > freesurfer are you running? > > Martin Kavec wrote: > > Hi, > > > > I am trying to mask a non-brain tissue left by watershed based on the > > cortical surfaces. I found that all what I need to be left is in > > aparc+aseg.mgz, so I converted it to nifiti, along with brainmask.mgz and > > used FSL to binarize aparc+aseg and mask the brainmask. I found that at > > many places the results is too conservative and too much of the GM is > > missing, see the attached images, and particularly the temporal lobes. > > > > Is there a better approach to what I am trying to do and what could be > > the explanation to the results I get. > > > > Thanks, > > > > Martin _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
