I attempted to re-run using the -clean-aseg flag, but this time got an error which said:
ERROR: cannot find [subject path]/mri/aseg.mgz Is the underlying problem that I used two different versions? Should I sync up the two versions (one is on a server and one is on my desktop) in order to avoid this issue altogether? -----Original Message----- From: Nick Schmansky [mailto:ni...@nmr.mgh.harvard.edu] Sent: Wed 2/11/2009 12:43 PM To: Dankner, Nathan (NIH/NIMH) [F] Cc: Freesurfer Mailing List Subject: RE: [Freesurfer] exited with errors they can be started from the -autorecon2 stage (also include - autorecon3). On Wed, 2009-02-11 at 12:05 -0500, Dankner, Nathan (NIH/NIMH) [F] wrote: > Yes, the versions are different. I am not sure of the exact version numbers, > but I believe they are the 2 most recent releases. Do I need to run the > scans from autorecon1 with the clean-aseg command, or can I run them from > later processing steps? Thanks for your help, > > Nathan > > > -----Original Message----- > From: Nick Schmansky [mailto:ni...@nmr.mgh.harvard.edu] > Sent: Wed 2/11/2009 11:53 AM > To: Dankner, Nathan (NIH/NIMH) [F] > Cc: Freesurfer Mailing List > Subject: Re: [Freesurfer] exited with errors > > What version of freesurfer are you using now and what version was used > to process the data? I suspect mixed versions were used. You can rerun > with the -clean-aseg flag to start again. > > On Wed, 2009-02-11 at 10:43 -0500, Dankner, Nathan (NIH/NIMH) [F] wrote: > > Hello all, > > > > I have recently been running some scans with very few defects, but have > > been encountering a particular error message on occasion when I try to run > > it through autorecon2 and autorecon3 after a bit of manual correction. The > > error output is: > > > > MRI_fill: could not read segmentation from aseg.auto_noCC.mgz > > reading segmented volume aseg.auto_noCCseg.mgz... > > ERROR: cannot find [subject path]/aseg.auto_noCCseg.mgz > > No such file or directory > > > > Any suggestions as to why this is happening? > > > > Nathan > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
