what's your cmd? You need to make sure to add --in lh.thickness to get
thickness in the summary file
Alexandru Hanganu wrote:
Thank you Nick, and Doug for your answers. I used both "--reshape"
flag and "--noreshape" flag and the results after "mri_segstats" were
in both cases:
.
.
.
Voxel Volume is 1 mm^3
Generating list of segmentation ids
Found 2 segmentations
Computing statistics for each segmentation
0 0 134504 134504
1 1 29338 29338
Reporting on 2 segmentations
So I understand that these are the thickness data of the mask I used.
Are these data in mm ? Because when using "mris_anatomical_stats"
command line to see the thickness - the data is in mm, and is very
different.
Sincerely,
Alex.
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