did you create a subject called "average"? This is done with
make_average_subject. Alternatively, we distribute an average subject
called fsaverage, so you can just use that instead if you want.
doug
Alexandru Hanganu wrote:
Dear Freesurfer Users,
We have a little problem with mri_surf2surf. Our goal is to determine
the statistical data - t-test, ANOVA, for a group of subjects. So
initially we made the recon-all, autorecon1,2,3 and -qcache for all
subjects. After that we created the FSGD file and mris_preproc - in
order to create ?h.thickness.mgh file. Now in order to initiate the
mri_glmfit step we have to create the ?h.thickness.sm10..mgh file with
the mri_surf2surf command.
We used this command line:
mri_surf2surf --hemi lh \
--s average \
--sval lh.thickness.mgh \
--fwhm 10 \
--tval lh.thickness.sm10.mgh
and we receive the Error:
– /usr/local/freesurfer/subjects/average/surf/lh.sphere.reg – could not open
file
Could you please tell us where might be the mistake ? What step is needed to
create the lh.sphere.reg file. Thank you very much for your help.
Best regards,
Dr. Alexandru Hanganu
___________________________________
Department of Neurology,
Schleswig-Holstein University Hospital, Kiel Campus
Arnold-Heller-Str. 3, building no. 41
D-24105 Kiel, Germany.
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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