one way to do it is with mri_concat, something like
mri_concat f???.img --o f.nii.gz
if your individual volumes are f000.img f001.img etc
Kara Dyckman wrote:
I'm not sure. When I just tried it, it converted to .nii.gz. Maybe
it has to do with the version of fsl being used? I'm posting this to
the freesurfer listserv to see if anyone else has ideas.
Xu Cui wrote:
Thanks Kara. I tried fslmerge on my images and the result is a
single .img / .hdr pair, not a nii or nii.gz file. Do you have any
clue? The reason to convert to nii is that fsfast seems to require
nii file.
Thanks,
Xu
On Thu, Oct 23, 2008 at 2:20 PM, Kara Dyckman
<[EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>> wrote:
If I remember correctly, you can use the fslmerge command to merge
all the .hdr files into one nifti file.
Try this in the directory where your analyze files are:
fslmerge -t outputname *.hdr
outputname is whatever you want to call your new nifti file
The result will be outputname.nii.gz
Hope that helps!
Kara
Xu Cui wrote:
Does anybody know how to convert a series of Analyze files
into a single nii file? Each analyze file is a single 3D
volume at a time point; the nii file would be 4d.
Thanks,
Xu
--
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Xu Cui
Department of Psychiatry and Behavioral Sciences
Stanford University
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-- Kara A. Dyckman, Ph.D.
Postdoctoral Fellow, Manoach Lab
Psychiatric Neuroimaging
Massachusetts General Hospital
Charlestown Navy Yard
149 13th St.
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email: [EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>
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Xu Cui
Department of Psychiatry and Behavioral Sciences
Stanford University
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MGH-NMR Center
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