I'm not sure. When I just tried it, it converted to .nii.gz. Maybe it
has to do with the version of fsl being used?
I'm posting this to the freesurfer listserv to see if anyone else has ideas.
Xu Cui wrote:
Thanks Kara. I tried fslmerge on my images and the result is a single
.img / .hdr pair, not a nii or nii.gz file. Do you have any clue?
The reason to convert to nii is that fsfast seems to require nii file.
Thanks,
Xu
On Thu, Oct 23, 2008 at 2:20 PM, Kara Dyckman
<[EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>> wrote:
If I remember correctly, you can use the fslmerge command to merge
all the .hdr files into one nifti file.
Try this in the directory where your analyze files are:
fslmerge -t outputname *.hdr
outputname is whatever you want to call your new nifti file
The result will be outputname.nii.gz
Hope that helps!
Kara
Xu Cui wrote:
Does anybody know how to convert a series of Analyze files
into a single nii file? Each analyze file is a single 3D
volume at a time point; the nii file would be 4d.
Thanks,
Xu
--
----------------------------------------------------------------
Xu Cui
Department of Psychiatry and Behavioral Sciences
Stanford University
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Kara A. Dyckman, Ph.D.
Postdoctoral Fellow, Manoach Lab
Psychiatric Neuroimaging
Massachusetts General Hospital
Charlestown Navy Yard
149 13th St.
Charlestown, MA 02129
email: [EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>
phone: 617-724-4604
fax: 617-726-4078
http://nmr.mgh.harvard.edu/manoachlab
--
----------------------------------------------------------------
Xu Cui
Department of Psychiatry and Behavioral Sciences
Stanford University
----------------------------------------------------------------
--
Kara A. Dyckman, Ph.D.
Postdoctoral Fellow, Manoach Lab
Psychiatric Neuroimaging
Massachusetts General Hospital
Charlestown Navy Yard
149 13th St.
Charlestown, MA 02129
email: [EMAIL PROTECTED]
phone: 617-724-4604
fax: 617-726-4078
http://nmr.mgh.harvard.edu/manoachlab
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