I do get /autofs see below [snapjudge:dep_LGI] (nmr-std-env) pwd /autofs/space/barlab_002/users/cibu/dep_LGI
But I changed source directory to /autofs/space/barlab/2/users/cibu/dep_LGI and as pratap pointed out ?h.lgi does not exist I changed it to ?h.pial_lgi and things are working fine I am a newbie to FS. Many thanks for helping with this Doug, Pratap - Cibu On Thu, 2008-09-18 at 11:22 -0400, Doug Greve wrote: > /space/barlab_002/users/cibu/dep_LGI does not exist > > > > Cibu Thomas wrote: > > >Hello > >When I run the mri_preproc command I am getting the message > >ERROR: cannot find fsaverage in /space/barlab_002/users/cibu/dep_LGI > >But the fsaverage folder is in the path and subjects_dir is set > >correctly. > >So I am not sure what's wrong with the command > >Here's the command I am trying to run > > > >mris_preproc --fsgd lgi_N32_Dep_Ctrl_Age_BDI.fsgd --target fsaverage -- > >hemi lh --meas lgi --out N32_lgi_dep_ctrl_Age_BDI_lh.mgh > > > > > >Any help would be greatly appreciated > > > >Thankyou > >Cibu Thomas > > > >_______________________________________________ > >Freesurfer mailing list > >Freesurfer@nmr.mgh.harvard.edu > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
