Hi Bruce,
for sure, I didnt expect it to all be in one place!
For example, what I believe are the original papers (Neuroimage 9 1999,
and the 1993 Cognitive Neuroscience paper), describe the first method,
then we have all the other subsequent papers. So for example, does the
current methodology use the brain stripping from Neuroimage 22 (2004),
(i believe it does, but I'm a newbie.), and is the volume segmentation
best described in the 2002 Neurotechnique paper "Whole brain
segmentation...."? Or has it been superceded by the methodology in
Neuroimage 23 (2004) "Sequence-independent segmentation of magnetic
resonance imaging".
I suppose, another way of phrasing the question is simply, which
methodology papers are in the current software version, which ones have
been superseded, and which ones are totally cutting edge research, and
not part of the software package?
I just wondered if anyone had a view on this, or compiled a handy list
that they would be willing to share?
Many thanks in advance.
Matt
Matt Clarkson
Senior Research Associate
Dementia Research Centre
UCL
Institute Of Neurology
Queen Square
London WC1N 3BG
[EMAIL PROTECTED]
Tel: 08451 555 000 ext. 723653
Fax: 020 7676 2066
Bruce Fischl wrote:
Hi Matt,
the methodologies are described in those papers. Sorry, I don't think
there's any one or two paper summary - it's just too much stuff over
the years (topology correction, segmentation, surface analysis,
morphing, etc....).
Bruce
On Fri, 12 Sep 2008, Matt Clarkson wrote:
Dear everyone,
Hopefully someone can help me. If I do "recon-all --help" i can see
a list of 31 steps for the main cortical thickness pipeline. Does
anyone have a list that links each of the 31 steps to the most
current methodology paper?
I've been reading most of the methodology papers referenced in the
wiki, but the software has clearly evolved over the years, and even
though you can read the wiki, and trawl through log files, I want to
be absolutely sure that for each step, I know exactly what algorithm
is applied. Has anyone gone through this before?
Thanks in advance,
Matt
Matt Clarkson
Senior Research Associate
Dementia Research Centre
UCL
Institute Of Neurology
Queen Square
London WC1N 3BG
[EMAIL PROTECTED]
Tel: 08451 555 000 ext. 723653
Fax: 020 7676 2066
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
