That's strange. Is the file corrupted? Can you send the mc-sess back to me?
Balaji Goparaju wrote:
Hi,
I copied the new version of the programs
mktemplate-sess
surfsmooth-sess
stc-sess
mkbrainmask-sess
mc-sess
When i try to run preproc-sess -s LD-functional -fwhm 5 again, I get
the following error,
--------------------------------------------------------------
preproc-sess logfile is log/preproc-sess.log
--------------------------------------------------------------
instem f
mc 1 f fmc
stc 0 fmc
sm 1 fmc fmcsm5
mask 1 brain
LD-functional MC -----------------------------
Tue Jul 22 09:25:08 EDT 2008
/Users/balajigoparaju/Desktop/subjectdata
mc-sess -fstem f -fmcstem fmc -s LD-functional -d
/Users/balajigoparaju/Desktop/subjectdata -fsd bold -new -update -no-inorm
----------------------------------------
/Applications/freesurfer/fsfast/bin/mc-sess: line 1:
{rtf1macansicpg10000cocoartf824cocoasubrtf480: command not found
/Applications/freesurfer/fsfast/bin/mc-sess: line 2: syntax error near
unexpected token `}'
/Applications/freesurfer/fsfast/bin/mc-sess: line 2:
`{\fonttbl\f0\fswiss\fcharset77 Helvetica;}'
ERROR: mc-sess failed
And then i tried changing the mc-sess.backup file back to the mc-sess
(Using the older version of mc-sess), and then the mc-sess and
spatialsmooth-sess part of the preproc-sess program worked fine, but i
get a similar error for the brainmask-sess program.
Tue Jul 22 09:19:12 EDT 2008
/Users/balajigoparaju/Desktop/subjectdata
mkbrainmask-sess -maskstem brain -fsd bold -s LD-functional -d
/Users/balajigopa
raju/Desktop/subjectdata -update
----------------------------------------
/Applications/freesurfer/fsfast/bin/mkbrainmask-sess: line 1:
{rtf1macansicpg100
00cocoartf824cocoasubrtf480: command not found
/Applications/freesurfer/fsfast/bin/mkbrainmask-sess: line 2: syntax
error near
unexpected token `}'
/Applications/freesurfer/fsfast/bin/mkbrainmask-sess: line 2:
`{\fonttbl\f0\fswi
ss\fcharset77 Helvetica;}'
ERROR: mkbrainmask-sess failed
Thank you for any help.
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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