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Thanks Pedro Paulo de Magalh?es Oliveira Junior!My error corrected after
modifying 'tmpdir in bin/mri_nu_correct.mni'.Best regard!Woo-Suk, Tae
Chuncheon, Korea--- Original Message ---From : "Pedro Paulo de Magalh?es
Oliveira Junior"To : "Woo-Suk, Tae"Date : 2008/07/08 화요일 오전
1:12:44Subject : Re: Re: [Freesurfer] path error on cluster super-computer
I think you can change
tmpdir in bin/mri_nu_correct.mni
But first check if you are setting the variables correctly: FREESURFER_HOME and
executing source SetUpFreeSurfer.sh
2008/7/7 Woo-Suk, Tae [EMAIL PROTECTED]:The super-user of super-computer did
not give me the writing permission for /usr/tmp,so I should modify the source
script of FreeSurfer.How can I do it?
Woo-Suk, TaeChuncheon, Korea
--- Original Message ---From : "Pedro Paulo de Magalh?es Oliveira
Junior"[EMAIL PROTECTED] : "Woo-Suk, Tae"[EMAIL PROTECTED] :
2008/07/07 월요일 오전 9:28:29Subject : Re: [Freesurfer] path error on cluster
super-computer
I would try:
chmod -R 777 /usr/tmp
2008/7/6 Woo-Suk, Tae [EMAIL PROTECTED]:
Dear FreeSurfer experts!I had a error message when I ran a subjects on cluter
super-computer.It seemed that the error was caused by permission on
"/usr" directory.How can I correct this problem?Woo-Suk,
TaeChuncheon,
Korea-------------------------------------------------------------------------------------------Iteration
1 Mon Jul 7 08:51:03 KST 2008nu_correct -clobber
./tmp.mri_nu_correct.mni.25070/nu0.mnc
./tmp.mri_nu_correct.mni.25070/nu1.mnccouldn't create
"/usr/tmp/nu_correct_25115/": Permission [EMAIL
PROTECTED]:/home01/a174tws/freesurfer/subjects/001/mri/] [2008-07-07 08:51:04]
running: /home01/a174tws/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log
-sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify
-b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir
/usr/tmp/nu_correct_25115/ ./tmp.mri_nu_correct..mni.25070/nu0.mnc
./tmp.mri_nu_correct.mni.25070/nu1.imp
nccreate: filename "/usr/tmp/nu_correct_25115/nu0.mnc": No such file
or directorymicreate: MINC package entry pointnu_estimate_np_and_em: crashed
while running mincresample (termination status=768)nu_correct: crashed while
running nu_estimate_np_and_em (termination status=768)ERROR: nu_correctLinux
tachyond 2.6.9-67.0.4.ELsmp #1 SMP Wed Mar 19 15:45:32 KST 2008 x86_64 x86_64
x86_64 GNU/Linux
recon-all exited with ERRORS at Mon Jul 7 08:51:05 KST
2008-------------------------------------------------------------------------------------------
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