I think you can change tmpdir in bin/mri_nu_correct.mni
But first check if you are setting the variables correctly: FREESURFER_HOME and executing source SetUpFreeSurfer.sh 2008/7/7 Woo-Suk, Tae <[EMAIL PROTECTED]>: > The super-user of super-computer did not give me the writing permission for > /usr/tmp, > > so I should modify the source script of FreeSurfer. > > How can I do it? > > > Woo-Suk, Tae > Chuncheon, Korea > > > --- Original Message --- > *From : *"Pedro Paulo de Magalh?es Oliveira Junior"<[EMAIL PROTECTED]> > *To : *"Woo-Suk, Tae"<[EMAIL PROTECTED]> > *Date : *2008/07/07 월요일 오전 9:28:29 > *Subject : *Re: [Freesurfer] path error on cluster super-computer > > I would try: > > chmod -R 777 /usr/tmp > > 2008/7/6 Woo-Suk, Tae <[EMAIL PROTECTED]>: > >> >> Dear FreeSurfer experts! >> >> I had a error message when I ran a subjects on cluter super-computer. >> It seemed that the error was caused by permission on "/usr" directory. >> How can I correct this problem? >> >> Woo-Suk, Tae >> Chuncheon, Korea >> >> >> >> >> ------------------------------------------------------------------------------------------- >> Iteration 1 Mon Jul 7 08:51:03 KST 2008 >> nu_correct -clobber ./tmp.mri_nu_correct.mni.25070/nu0.mnc >> ./tmp.mri_nu_correct.mni.25070/nu1.mnc >> couldn't create "/usr/tmp/nu_correct_25115/": Permission denied >> [EMAIL PROTECTED]:/home01/a174tws/freesurfer/subjects/001/mri/] >> [2008-07-07 08:51:04] running: >> /home01/a174tws/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log >> -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify >> -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir >> /usr/tmp/nu_correct_25115/ ./tmp.mri_nu_correct..mni.25070/nu0.mnc >> ./tmp.mri_nu_correct.mni.25070/nu1.imp >> >> nccreate: filename "/usr/tmp/nu_correct_25115/nu0.mnc": No such file or >> directory >> micreate: MINC package entry point >> nu_estimate_np_and_em: crashed while running mincresample (termination >> status=768) >> nu_correct: crashed while running nu_estimate_np_and_em (termination >> status=768) >> ERROR: nu_correct >> Linux tachyond 2.6.9-67.0.4.ELsmp #1 SMP Wed Mar 19 15:45:32 KST 2008 >> x86_64 x86_64 x86_64 GNU/Linux >> >> recon-all exited with ERRORS at Mon Jul 7 08:51:05 KST 2008 >> >> ------------------------------------------------------------------------------------------- >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr..mgh.harvard.edu/mailman/listinfo/freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
