Hi, the second option (copying tksurfer.bin) worked.
thanks! -joost On Wed, Apr 30, 2008 at 4:09 PM, Nick Schmansky <[EMAIL PROTECTED]> wrote: > Joost, > > Try both of these things: > > - update the nvidia driver from their website (or run nvidia-installer > --update, which does this for you). > > - copy tksurfer.bin from here: > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/nicks/stable/centos4_x86_64 > > to here: > $FREESURFER_HOME/bin > > Nick > > > On Wed, 2008-04-30 at 12:31 +0200, j janssen wrote: > > Hi, > > > > i can not see the pial surface using tksurfer. i´m using Fedora core > > 7, 64 bits, with version: freesurfer-Linux-centos4_x86_64-stable-pub- > > v4.0.3-full.tar.gz, with nvidia card. > > > > when i enter: > > ldd /usr/local/freesurfer/bin/tksurfer.bin > > i get: > > linux-vdso.so.1 => (0x00007fff463fd000) > > libtix8.1.8.4.so => not found > > libtk8.4.so => /usr/lib64/libtk8.4.so (0x0000003678a00000) > > libtcl8.4.so => /usr/lib64/libtcl8.4.so (0x0000003678600000) > > libGLU.so.1 => /usr/lib64/libGLU.so.1 (0x00002aaaaaaca000) > > libXmu.so.6 => /usr/lib64/libXmu.so.6 (0x0000003c35600000) > > libGL.so.1 => /usr/lib64/libGL.so.1 (0x0000003c2d200000) > > libXext.so.6 => /usr/lib64/libXext.so.6 (0x0000003c28400000) > > libX11.so.6 => /usr/lib64/libX11.so.6 (0x0000003c27c00000) > > libexpat.so.0 => /lib64/libexpat.so.0 (0x0000003c28800000) > > libjpeg.so.62 => /usr/lib64/libjpeg.so.62 (0x0000003c2f200000) > > libtiff.so.3 => /usr/lib64/libtiff.so.3 (0x000000367e800000) > > libz.so.1 => /lib64/libz.so.1 (0x0000003c26400000) > > libcrypt.so.1 => /lib64/libcrypt.so.1 (0x0000003c38200000) > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003c26000000) > > libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003c26c00000) > > libstdc++.so.6 => /usr/lib64/libstdc++.so.6 > > (0x0000003ed0a00000) > > libm.so.6 => /lib64/libm.so.6 (0x0000003ed0e00000) > > libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000003c33200000) > > libc.so.6 => /lib64/libc.so.6 (0x0000003c25800000) > > libXt.so.6 => /usr/lib64/libXt.so.6 (0x0000003c38e00000) > > libXxf86vm.so.1 => /usr/lib64/libXxf86vm.so.1 > > (0x0000003c3ae00000) > > libdrm.so.2 => /usr/lib64/libdrm.so.2 (0x0000003c2d600000) > > libXau.so.6 => /usr/lib64/libXau.so.6 (0x0000003c27400000) > > libXdmcp.so.6 => /usr/lib64/libXdmcp.so.6 (0x0000003c27000000) > > /lib64/ld-linux-x86-64.so.2 (0x0000003c25400000) > > libSM.so.6 => /usr/lib64/libSM.so.6 (0x0000003c2fa00000) > > libICE.so.6 => /usr/lib64/libICE.so.6 (0x0000003c30200000) > > > > starting tksurfer: > > [EMAIL PROTECTED] subjects]$ tksurfer bert rh pial > > gives: > > surfer: current subjects dir: /usr/local/freesurfer/subjects > > surfer: not in "scripts" dir ==> using cwd for session root > > surfer: session root data dir ($session) set to: > > surfer: /usr/local/freesurfer/subjects > > surfer: Reading header info > > from /usr/local/freesurfer/subjects/bert/mri/T1.mgz > > surfer: vertices=131277, faces=262550 > > Loading /usr/local/freesurfer/surface_labels.txt > > surfer: ### redraw failed: no gl window open > > surfer: single buffered window > > surfer: using interface /usr/local/freesurfer/lib/tcl/tksurfer.tcl > > Reading /usr/local/freesurfer/lib/tcl/tkm_common.tcl > > Reading /usr/local/freesurfer/lib/tcl/tkm_wrappers.tcl > > Reading /usr/local/freesurfer/lib/tcl/fsgdfPlot.tcl > > Reading /usr/local/freesurfer/lib/tcl/tkUtils.tcl > > Successfully parsed tksurfer.tcl > > reading white matter vertex locations... > > > > can you help? > > > > thanks! > > -joost > > > > > > > > > > > > > > On Fri, Apr 25, 2008 at 4:05 PM, Nick Schmansky > > <[EMAIL PROTECTED]> wrote: > > If you have an Nvidia graphics card, you will need to update > > the driver. > > > > Try running nvidia-installer --update, as root (preferably > > have your > > sysadmin do this). > > > > Nick > > > > > > On Fri, 2008-04-25 at 21:25 +0800, yczhang wrote: > > > Hi, > > > when I launched the command tksurfer to see the constructed > > pial > > > surface, > > > only a very small part of the surface can been seen in the > > window. > > > I do not know how to fix the problem. > > > Thanks! > > > > > > > > > > > > ______________________________________________________________________ > > > yczhang > > > 2008-04-25 > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >
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