Wonderful, thanks. DD
-----Original Message----- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Nick Schmansky Sent: Thursday, November 29, 2007 5:19 PM To: Dan Dillon Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] Another talairach question . . . Dan, Include the flag: -notal-check and this will skip the talairach failure detection stage. Nick On Thu, 2007-11-29 at 16:57 -0500, Dan Dillon wrote: > Dear FreeSurfers, > > > > In the course of checking my skull-strips I discovered that one of my > subjects does not have a T1.mgz because they did not pass the > automatic Talairach failure detection. I checked the transformation > with tkregister2 and -fstal, and it actually looks quite good; the > brain is tilted, but the Talairach brain follows the tilt nicely. > Nonetheless, to move things forward I made a few small edits and saved > the registration. I then re-ran autorecon1 using the -notalairach > option (at the end of the command line) in order to make use of my > edits. However, I got the exact same error back-Talairach > transformation ***FAILED***--and consequently there's no T1.mgz. > > > > I thought that by specifying -notalairach at the end of the command > line while running autorecon1, I would be bypassing the Talairach > detector and thus would be able to avoid this problem, but I'm > obviously wrong. How do I make use of my edited Talairach and get > autorecon1 to continue? > > > > Thanks in advance, > > > > Dan Dillon, Ph.D. > > Post-doctoral Fellow > > Affective Neuroscience Lab > > Dept. of Psychology, Harvard University > > Phone: (617) 495-1889 > > E-mail: [EMAIL PROTECTED] > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
