Hi all,
I'm running into a problem with log output for
mris_anatomical_stats. The console output seems fine, but log files are
blank.
The command:
($SUBJECTS_DIR = /space/colossus/7/users/MSpect)
mris_anatomical_stats -t lh.thickness \
-label lh.cortex.label \
-nsmooth 15 \
-log ${SUBJECTS_DIR}/001_MEF_A/stats/lh.anat_stats.15.log \
001_MEF_A lh
The output:
outputting results to
/space/colossus/7/users/MSpect/001_MEF_A/stats/lh.anat_stats.15.log...
reading volume /space/colossus/7/users/MSpect/001_MEF_A/mri/wm.mgz...
reading input surface
/space/colossus/7/users/MSpect/001_MEF_A/surf/lh.white...
reading input pial surface
/space/colossus/7/users/MSpect/001_MEF_A/surf/lh.pial...
reading input white surface
/space/colossus/7/users/MSpect/001_MEF_A/surf/lh.white...
Smooth thickness map with 15 iterations on surface
Smoothing done, nsteps = 15, tsec = 0.762
structure is "lh.cortex.label"
number of vertices = 150813
total surface area = 99113 mm^2
total gray matter volume = 253515 mm^3
average cortical thickness = 2.333 mm +- 0.514 mm
average integrated rectified mean curvature = 0.138
average integrated rectified Gaussian curvature = 0.048
folding index = 2289
intrinsic curvature index = 297.7
using thickness file rh.thickness.
limiting computations to label rh.cortex.label.
Smooth thickness by 15 steps before using it
The log:
[colossus:MSpect] (nmr-std-env) ls -al 001_MEF_A/stats/lh.anat_stats.15.log
-rw-rw-r-- 1 jswonder bnllab 0 Oct 26 11:30
001_MEF_A/stats/lh.anat_stats.15.log
E.g., file exists, nothing in there.
bugr output:
FREESURFER_HOME: /usr/local/freesurfer/stable4
Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.0.1-20071025
RedHat release: CentOS release 4.4 (Final)
Kernel info: Linux 2.6.9-42.0.3.ELsmp x86_64
NMR Center info (/space/freesurfer exists):
machine: colossus
SUBJECTS_DIR: /space/colossus/7/users/MSpect
PWD: /space/colossus/7/users/MSpect
I could just be overlooking something simple, but I don't see what it is
at present.
Thanks,
Julien
--
Julien Wonderlick
Research Assistant, Behavioral Neuroscience Laboratory
Department of Brain and Cognitive Sciences, MIT
Building 46-5127
617.253.7437
[EMAIL PROTECTED]
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
