I did not run the autorecon3 before I checked the parcellation. Thank you, Xin
________________________________ From: Bruce Fischl [mailto:[EMAIL PROTECTED] Sent: Tue 9/11/2007 11:33 AM To: Wang, Xin Cc: freesurfer Subject: RE: [Freesurfer] parcellation problem that type of pattern usually means you loaded the wrong hemisphere (e.g. the lh.aparc.annot on the rh.inflated or visa versa) On Mon, 10 Sep 2007, Wang, Xin wrote: > the following error is reported when I run the tksurfer and load annotation. > I attach a image of parcellation. > > Thank you. > > Xin > > Talairach transform > /home/xwang/bin/freesurfer/subjects/amputation/APN01R650/mri/transforms/talairach.xfm > does not exist ... > Loading tal xfm file > /home/xwang/bin/freesurfer/subjects/APN01R650_f/mri/transforms/talairach.xfm > surfer: Reading header info from > /home/xwang/bin/freesurfer/subjects/APN01R650_f/mri/T1.mgz > surfer: vertices=130570, faces=261136 > Talairach transform > /home/xwang/bin/freesurfer/subjects/amputation/APN01R650/mri/transforms/talairach.xfm > does not exist ... > Loading tal xfm file > /home/xwang/bin/freesurfer/subjects/APN01R650_f/surf/../mri/transforms/talairach.xfm > > > ________________________________ > > From: Bruce Fischl [mailto:[EMAIL PROTECTED] > Sent: Mon 9/10/2007 2:31 PM > To: Wang, Xin > Cc: freesurfer > Subject: Re: [Freesurfer] parcellation problem > > > > can you send us an image to show what you mean by "completely messed up"? > On > Mon, 10 Sep 2007, Wang, Xin wrote: > >> Hello, Group, >> >> After I manually removed the skull around cerebellum in the brainmask.mgz, >> the parcellation of the final inflated brain is totally messed up. Manual >> corrections of talairach transform and white matter surface did not mess up >> the parcellation. Could anyone tell me what is wrong? >> >> Thank you in advance, >> >> Xin Wang >> > > >
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