can you send us an image to show what you mean by "completely messed up"?
On Mon, 10 Sep 2007, Wang, Xin wrote:

Hello, Group,

After I manually removed the skull around cerebellum in the brainmask.mgz, the 
parcellation of the final inflated brain is totally messed up. Manual 
corrections of talairach transform and white matter surface did not mess up the 
parcellation. Could anyone tell me what is wrong?

Thank you in advance,

Xin Wang

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