Lusineh, Which version of freesurfer do you have? To find out, type:
cat $FREESURFER_HOME/build-stamp.txt Per the release notes page (which documents updates), a fix was included in v3.0.4 (and newer) that addresses a problem where the pial surface crosses the midline: http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes So you may need to update to the latest version if you have pre v3.0.4. Or you can get mris_make_surfaces_linux.gz here: ftp://surfer.nmr.mgh.harvard.edu/pub/dist then: cp mris_make_surfaces_linux.gz $FREESURFER_HOME/bin cd $FREESURFER_HOME/bin gunzip mris_make_surfaces_linux.gz mv mris_make_surfaces_linux mris_make_surfaces chmod a+x mris_make_surfaces Nick On Mon, 2007-04-30 at 16:31 -0700, Lusineh Gharapetian wrote: > Hello, > > I don't know how to edit a problem that I have run into on several > slices in both hemispheres of multiple brains. The problem is that the > pial surface line crosses into white matter. I have attached a couple > of instances of this occurring. It happens on multiple slices in a row > or as a single slice problem. I would greatly appreciate any advice on > how to deal with this. Let me know if you need any further > information. Thanks! > > > > Sincerely, > > Lusineh Gharapetian > Staff Research Associate > Multi Modal Imaging Lab (MMIL) > UC San Diego > > office. 858. 822.1818 > email. [EMAIL PROTECTED] > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
