Dear all,
I have run several subjects on a 64-bit machine using the stable
release. I recently installed the 32-bit stable version on a 32-bit
machine. I noticed that running stage1 on the 32-bit version took much
longer than running stage1 on the 64-bit machine (several hours,
actually). So I looked at the recon-all scripts for each version and I
noticed that they were different. The 32-bit version includes the extra
steps DoGCAReg, DoCANormalize, DoCAReg, and DoCALabel. Does anyone know
why this is? Below are the stage1 lists for each version.
Thanks,
Sasha
32-bit version:
case "-stage1":
set DoMotionCor = 1;
set DoTalairach = 1;
set DoNuIntensityCor = 1;
set DoNormalization = 1;
set DoSkullStrip = 1;
set DoSegmentation = 1;
set DoGCAReg = 1;
set DoCANormalize = 1;
set DoCAReg = 1;
set DoCALabel = 1;
set DoFill = 1;
set DoTessellate = 1;
set SvInitOrigSurf = 1;
set DoSmooth1 = 1;
set DoInflate1 = 1;
set SvInitInflated = 1;
breaksw
64-bit version:
case "-stage1":
set DoMotionCor = 1;
set DoTalairach = 1;
set DoNuIntensityCor = 1;
set DoNormalization = 1;
set DoSkullStrip = 1;
set DoSegmentation = 1;
set DoFill = 1;
set DoTessellate = 1;
set SvInitOrigSurf = 1;
set DoSmooth1 = 1;
set DoInflate1 = 1;
set SvInitInflated = 1;
breaksw
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