-b doesn't seem to work. The command is below, and the format of the output, are below. Is this a bug?
mris_anatomical_stats -l 1000027_lh_roi.label -b -log roi.log 1000027 lh white Output: % 1000027: <wm vol> <surf area> <gray vol> <thick mean> <thick var> <integ rect. mean curv> <integ rect. Gauss curv> <fold index> <intr curv ind> 592393 124 321 2.582 0.698 0.068 0.022 4.448 0.588 -----Original Message----- From: Bruce Fischl [mailto:[EMAIL PROTECTED] Sent: Sat 9/17/2005 10:33 PM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] anatomical stats try -b On Sat, 17 Sep 2005, Fornito, Alexander wrote: > I can create a log file, but in the output, the numbers are out of alignment, > so you can't easily figure out what each number refers to. Is there some > preferable output format or suffix that I can add to the log file name to > adjust this? > > Also, I can't seem to use the -f flag to create a table. > mris_anatomical_stats runs, but there is no table file output at the end. Is > this only for the annotation table (I'm using custom labels)? An example > command I've tried is: > > mris_anatomical_stats -mgz -l roi.label -f roi_table 1000001 lh white > > > -----Original Message----- > From: Bruce Fischl [mailto:[EMAIL PROTECTED] > Sent: Fri 9/16/2005 9:51 PM > To: Fornito, Alexander > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] anatomical stats > p.s. the flags should always come before the mandatory command line args. > > On > Fri, 16 Sep 2005, Fornito, Alexander wrote: > >> Hi, >> I'm using the 20050905 distribution and it seems like mris_anatomical_stats >> is trying to look for cor files, when I've run my analyses using mgz. Is >> there a way to change this, or have I got it wrong?. Here is the output >> >> mris_anatomical_stats 1000001 lh white >> reading volume >> /data/flanders/work/alex/freesurfer/subjects_fe/1000001/mri/wm... >> corRead(): can't open file >> /data/flanders/work/alex/freesurfer/subjects_fe/1000001/mri/wm/COR-.info >> mris_anatomical_stats: could not read input volume >> /data/flanders/work/alex/freesurfer/subjects_fe/1000001/mri/w >> >> >> Also, I've been having trouble using the -f and -log options (the program >> runs, but I can't seem to create an output file) with some other surfaces >> (that I have used cor with). Could you pls give me an example of how to use >> these flags in the command line? >> I tried: >> mris_anatomical_stats 1000027 lh white -l 1000027/label/1000027_roi.label -f >> roi_stats.log >> (and I also tried putting the options right after mris_anatomical_stats). >> Thanks, >> Alex >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
