Dear colleagues,
I am happy to announce the 6th edition of the Transmitting Science
course "Manipulation of NGS Data for Genomic and Population Genetics
Analyses", this course will be run online.
Schedule: Online live sessions on May 5th, 7th, 9th, 12th and 14th,
2025; 13:00 to 17:00 (Madrid time zone).
This course offers a comprehensive introduction to Next-Generation
Sequencing (NGS) data analysis, guiding participants through second and
third-sequencing technologies, command-line operations, and data
management. Key topics include quality assessment, variant detection,
and large-scale genomic analyses.
Participants will gain hands-on experience with computational pipelines
and explore analytical approaches to address diverse biological research
questions.
Course webpage:
https://www.transmittingscience.com/courses/genetics-and-genomics/manipulation-ngs-data-genomic-population-genetics-analyses/
Course programme:
* Introduction to NGS sequencing platforms.
* Introduction to basic command lines.
* Basic raw data manipulations (counting sequences, listing files).
* Raw data QC & Cleaning.
* Mapping: principle, tools, execution, cleaning, data control,…
* SNP calling: raw calling, cleaning calling, filtering.
* VCF manipulations: filtering on MAF, heterozygosity…
* Impact of SNPs on genes.
* Population genomics using sNMF.
* Assembling genomes with long reads
* Comparing assembled genomes and SV detection
* Testing tools and different conditions to answer different
biological questions.
* Discussion about bioinformatic strategies related with sientific
projects of participants.
Do not hesitate to contact us at cour...@transmittingscience.com if you
have any doubts or questions.
Best wishes
Sole
--
Soledad De Esteban-Trivigno, PhD
Director
Transmitting Science
www.transmittingscience.com/courses
X @SoleDeEsteban
Orcid: https://orcid.org/0000-0002-2049-0890
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