We seek a highly motivated postdoctoral researcher to work on a study of trees 
and microbes in a new project titled, “Rules of Life in the Urban Biome” 
(funded by the Keck Foundation). The project will include observational and 
manipulative experiments in the field and the lab to understand how 
urbanization impacts both above- and below-ground plant-microbial carbon and 
nutrient exchange. The postdoctoral researcher will be expected to implement 
appropriate molecular and biogeochemical tools to resolve the diversity of 
microbiome biochemistries on whole trees and how they relate to tree growth, 
mortality, and biogeochemical cycling through ecosystems. This is a 
Boston-based in-person position that includes coordination and collaboration 
across lab groups at BU and other U.S. institutions. A synopsis of the project 
can be found below.

Applicants with expertise in one or more of the listed areas are encouraged to 
apply: 
• Molecular ecology or microbial ecology, with experience generating and 
analyzing high throughput -omics data. 
• Biogeochemistry, including experience handling stable isotopes in field 
and/or lab-based studies 
• Computational expertise, including development and/or implementation of 
bioinformatics pipelines

Minimum qualifications include: 
• A PhD in Biology, Ecology, or a related scientific discipline. 
• Research experience in one or more of the following fields, microbiome 
science, computational biology, biogeochemistry, microbial ecology, molecular 
biology, microbiology, fungal biology.
• Evidence of scientific productivity in the form of publications in 
peer-reviewed journals. 
• Strong science writing and communication skills. 
• Ability to work independently as well as collaboratively as part of team
• Mentoring experience

The postdoc will be expected to carry out work outlined in the project 
description below and will have the opportunity to develop studies within their 
specific areas of interest as they relate to urban microbiomes. This position 
includes potential collaborations with other postdocs and faculty in the BU 
Biogeoscience Program, Biological Design Center, the Hariri Institute for 
Computing, the Center for Remote Sensing, and the Institute for Global 
Sustainability. Pay rate starts at $67,500/year, start date is flexible, and 
appointment is initially for one year with the possibility to extend for an 
additional 1-2 years provided acceptable progress. 

Interested parties should put the following materials in an to Jenny Bhatnagar 
(jmb...@bu.edu <mailto:jmb...@bu.edu>) with the subject line, “RoL Postdoc”

• A 1-page cover letter explaining research interests and experience
• A current CV with a list of 3 potential references and their contact info.

Project Synopsis

Cities are expanding around the world, with unexpected impacts on the non-human 
organisms that live there. Recently, it was discovered that urban trees grow 
four times faster than rural trees, despite there being a multitude of 
environmental stressors in cities and the loss of typical belowground 
mechanisms for nutrient acquisition, stress tolerance, and pathogen protection. 
It remains a mystery how trees thrive in urban environments without their 
belowground support system for nutrition and stress tolerance. The objective of 
our project is to solve the mystery of accelerated tree growth in cities by 
determining the mechanisms of nutrient acquisition and stress tolerance for 
urban trees. We hypothesize that city trees operate by an alternative “rule of 
life”, where urbanization shifts tree survival strategies from belowground 
roots to aboveground canopies, such that trees and their phyllosphere 
microbiomes take advantage of atmospheric pollution as sources of water, 
nutrients, and stress protection to support faster tree growth in cities. We 
will test this overarching hypothesis through two aims:

Aim 1: determine urbanization effects on aboveground vs. belowground mechanisms 
of tree water and N uptake. We will take field-based measurements (Aim 1.1) of 
(i) N inputs from atmospheric deposition, (ii) natural abundance stable 
isotopic measurements of δ15N (for N) and δ18O and δ2H (for water) movement 
from the atmosphere to tree tissues, microbial biomass, and soils, and (iii) a 
field-based 15N isotopic tracer experiment across a recently established, model 
urban-to-rural gradient. We will also conduct a whole-tree level 15N tracer and 
microbiome manipulation experiment in growth chambers (Aim 1.2) to examine the 
fate of N into specific plant and microbial biochemical pathways using stable 
isotope probing (SIP) metatranscriptomics.

Aim 2: determine urbanization effects on particulate matter (PM)-O3-tree 
physiology relationships. We will quantify relationships between atmospheric PM 
and O3 concentrations, leaf-level photosynthesis vs. photoinhibition, and 
stomatal clogging by PM in the field (Aim 2.1) using a combination of 
deposition monitoring, photosynthesis measurements, and high-resolution tree 
leaf surface imaging on trees across our urbanization gradient. To test for 
direct PM impacts on tree physiology, we will conduct a second growth chamber 
experiment (Aim 2.2) that simultaneously manipulates ambient O3 and PM levels 
and measures impacts on tree leaf photosynthesis, nutrient uptake, and plant 
growth rates.

The data we generate on how trees cope with or exploit the urban environment 
has the potential to completely redefine our understanding of how organisms 
acclimate to a rapidly changing world. If atmospheric pollutants like N or PM 
in cities provide a source of nutrition and stress protection for city trees, 
then efforts to improve overall urban air quality could lead to progressive 
nutrient limitation in urban trees and make them more vulnerable to O3 
phytotoxicity. Our study will provide data that directly informs these types of 
 environmental regulation policies, optimizing them for specific components of 
air pollution (e.g. PM, N, O3) at local and regional-scales. 


EEO/AA Policy
Boston University is an equal opportunity employer, and all qualified 
applicants will receive consideration for employment without regard to race, 
color, natural or protective hairstyle, religion, sex, age, national origin, 
physical or mental disability, sexual orientation, gender identity, genetic 
information, military service, pregnancy or pregnancy-related condition, or 
because of marital, parental, or veteran status. We are a VEVRAA Federal 
Contractor.

Jennifer Bhatnagar, Ph.D. (she/her/hers)
Associate Professor
Director, BU Biogeoscience Program
Department of Biology
Boston University
E-mail: jmb...@bu.edu <mailto:jmb...@bu.edu>
Website: http://microbesatbu.wordpress.com/
Book a time to meet: https://calendar.app.google/XRmgvcog3Usk3u3B7 

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