Hi Aaron,
Am Thu, Oct 14, 2021 at 12:24:29PM -0400 schrieb Aaron M. Ucko:
> Andreas Tille <ti...@debian.org> writes:
>
> > Ahhhm my failure. Usually I do it in this sequence.
>
> No problem; thanks for getting ngs-sdk now.
:-)
> I'll push fixes for both complications shortly.
Thanks a lot. Unfortunately there are some remaining problems
with the test suite. Salsa CI fails to build[1]:
Run
VDB_CONFIG=/builds/med-team/sra-sdk/debian/output/source_dir/test/fastq-loader
/builds/med-team/sra-sdk/debian/output/source_dir/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/test-bin/test-id2name
Running 14 test cases...
Init_NullSelf (0 s)
Whack_NullSelf (0 s)
Init_Whack (0 s)
Add_NullSelf (0 s)
Add_NullName (0 s)
Get_NullSelf (0 s)
Get_NullRes (0 s)
Get_Empty (0 s)
Get_Found (0 s)
Get_NotFound (0 s)
AddMultiple_Get (0 s)
AddRealloc (0 s)
Killed
make[4]: ***
[/builds/med-team/sra-sdk/debian/output/source_dir/build/Makefile.env:380:
runtests] Error 137
make[4]: Leaving directory
'/builds/med-team/sra-sdk/debian/output/source_dir/test/fastq-loader'
However, this works in my local pbuilder, where I get:
Run VDB_CONFIG=/build/sra-sdk-2.11.2+dfsg/test/fastq-loader
/build/sra-sdk-2.11.2+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/test-bin/test-id2name
Running 14 test cases...
Init_NullSelf (0 s)
Whack_NullSelf (0 s)
Init_Whack (0 s)
Add_NullSelf (0 s)
Add_NullName (0 s)
Get_NullSelf (0 s)
Get_NullRes (0 s)
Get_Empty (0 s)
Get_Found (0 s)
Get_NotFound (0 s)
AddMultiple_Get (0 s)
AddRealloc (0 s)
MiltipleBuffers (6 s)
NameTooLong (345 s)
*** No errors detected (352 s total)
Any idea what might be wrong here?
I was checking Salsa CI since in my local pbuilder autopkgtest fails
later (but this was due to some
2021-10-15T05:11:56 vdb-config.2.11.2 err: condition violated while updating
node - Warning: normally this application should not be run as root/superuser
... which is most probably a flaw of running autopkgtest in the
pbuilder chroot. Thus I expect autopkgtest in Salsa CI passing
... once it builds there.
Kind regards
Andreas.
[1] https://salsa.debian.org/med-team/sra-sdk/-/jobs/2074700#L1700
--
http://fam-tille.de
