Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
35aaf5aa by Andreas Tille at 2020-07-16T13:44:33+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,45 +1,43 @@
-Last-Update: Thu, 16 Jul 2020 01:42:04 +0000
+Last-Update: Thu, 16 Jul 2020 13:42:04 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 176 | {covid-19,imaging}
|
+ dcmtk | 171 | {covid-19,imaging}
|
orthanc | 88 | {covid-19,imaging,practice}
|
- gdcm | 47 | {imaging-dev}
|
- orthanc-wsi | 42 |
{his,practice,covid-19,laboratory,imaging,oncology} |
- htsjdk | 32 | {bio-dev}
|
+ gdcm | 46 | {imaging-dev}
|
+ orthanc-wsi | 43 |
{his,practice,covid-19,laboratory,imaging,oncology} |
+ htsjdk | 31 | {bio-dev}
|
dcm2niix | 22 | {imaging}
|
dicom3tools | 22 | {imaging}
|
- dicomscope | 20 | {imaging}
|
+ dicomscope | 19 | {imaging}
|
gnumed-server | 18 | {practice,covid-19}
|
- ngs-sdk | 17 | {bio-dev}
|
+ ngs-sdk | 15 | {bio-dev}
|
gdcm | 13 | {covid-19,imaging}
|
+ insighttoolkit4 | 13 | {imaging-dev}
|
invesalius | 13 | {imaging}
|
gdcm | 12 | {imaging-dev}
|
- insighttoolkit4 | 12 | {imaging-dev}
|
- jebl2 | 11 | {bio-dev}
|
- pixelmed | 11 | {imaging}
|
+ pixelmed | 12 | {imaging}
|
+ jebl2 | 10 | {bio-dev}
|
minc-tools | 10 | {imaging}
|
- ngs-sdk | 10 | {bio-dev}
|
adun.app | 9 | {bio}
|
lagan | 9 | {bio}
|
+ ngs-sdk | 9 | {bio-dev}
|
psychopy | 9 | {psychology}
|
vtk-dicom | 9 | {imaging}
|
libdivsufsort | 8 | {bio-dev}
|
melting | 8 | {bio,cloud}
|
openslide | 8 | {imaging}
|
orthanc-webviewer | 8 | {imaging}
|
+ plastimatch | 8 | {imaging}
|
biosig4c++ | 7 | {physics,imaging}
|
+ dicompyler | 7 | {oncology}
|
libminc | 7 | {imaging-dev}
|
orthanc-dicomweb | 7 | {imaging,covid-19}
|
- plastimatch | 7 | {imaging}
|
stacks | 7 | {bio}
|
treeview | 7 | {bio-phylogeny,bio}
|
biojava-live | 6 | {bio-dev}
|
biomaj3-cli | 6 | {cloud}
|
- dicompyler | 6 | {oncology}
|
ea-utils | 6 | {bio}
|
- king | 6 | {imaging,typesetting}
|
- librg-utils-perl | 6 | {bio}
|
orthanc-mysql | 6 | {imaging}
|
paraclu | 6 | {cloud,bio}
|
anfo | 5 | {bio,cloud}
|
@@ -47,8 +45,9 @@ Last-Update: Thu, 16 Jul 2020 01:42:04 +0000
biomaj3-daemon | 5 | {bio}
|
fastlink | 5 | {cloud,bio}
|
getdata | 5 | {bio}
|
+ king | 5 | {imaging,typesetting}
|
+ librg-utils-perl | 5 | {bio}
|
mlv-smile | 5 | {bio,cloud}
|
- ncbi-seg | 5 | {bio}
|
obitools | 5 | {bio}
|
orthanc-postgresql | 5 | {imaging}
|
phyutility | 5 | {bio,cloud}
|
@@ -65,19 +64,16 @@ Last-Update: Thu, 16 Jul 2020 01:42:04 +0000
mhap | 4 | {bio-ngs,bio}
|
mipe | 4 | {cloud,bio}
|
mrs | 4 | {bio}
|
+ ncbi-seg | 4 | {bio}
|
neobio | 4 | {cloud,bio}
|
nutsqlite | 4 | {tools}
|
piler | 4 | {bio}
|
- predictprotein | 4 | {bio}
|
+ qrisk2 | 4 | {practice}
|
scythe | 4 | {bio}
|
spread-phy | 4 | {bio-phylogeny,bio}
|
- squizz | 4 | {bio,cloud}
|
- staden | 4 | {bio}
|
transtermhp | 4 | {bio}
|
alter-sequence-alignment | 3 | {bio}
|
- ampliconnoise | 3 | {cloud,bio}
|
bandage | 3 | {bio}
|
- brig | 3 | {bio}
|
busco | 3 | {covid-19,bio}
|
daligner | 3 | {bio-ngs,bio}
|
ecopcr | 3 | {bio}
|
@@ -92,29 +88,31 @@ Last-Update: Thu, 16 Jul 2020 01:42:04 +0000
microbegps | 3 | {bio}
|
multiqc | 3 | {bio,covid-19}
|
perm | 3 | {cloud,bio}
|
- placnet | 3 | {bio}
|
+ predictprotein | 3 | {bio}
|
proalign | 3 | {bio-phylogeny,bio}
|
probabel | 3 | {cloud,bio}
|
- qrisk2 | 3 | {practice}
|
rdp-classifier | 3 | {bio}
|
relion | 3 | {bio}
|
runcircos-gui | 3 | {bio}
|
saint | 3 | {bio}
|
salmon | 3 | {bio,covid-19}
|
seqmagick | 3 | {covid-19,bio}
|
+ squizz | 3 | {bio,cloud}
|
+ staden | 3 | {bio}
|
tnseq-transit | 3 | {covid-19,bio}
|
tracetuner | 3 | {bio}
|
tvc | 3 | {bio}
|
+ ampliconnoise | 2 | {cloud,bio}
|
arden | 2 | {bio,cloud}
|
assemblytics | 2 | {bio}
|
baitfisher | 2 | {bio}
|
beast2-mcmc | 2 | {bio}
|
beast-mcmc | 2 | {bio-phylogeny,bio}
|
bio-rainbow | 2 | {bio}
|
- biosig4c++ | 2 | {physics,imaging-dev}
|
bio-tradis | 2 | {bio-dev,bio}
|
bitseq | 2 | {bio}
|
blasr | 2 | {bio,bio-ngs}
|
+ brig | 2 | {bio}
|
canu | 2 | {bio}
|
centrifuge | 2 | {bio,covid-19}
|
clonalframeml | 2 | {bio,covid-19}
|
@@ -143,6 +141,7 @@ Last-Update: Thu, 16 Jul 2020 01:42:04 +0000
pbdagcon | 2 | {bio}
|
phast | 2 | {bio}
|
phybin | 2 | {bio}
|
+ placnet | 2 | {bio}
|
prime-phylo | 2 | {bio,cloud}
|
prottest | 2 | {bio-phylogeny,bio}
|
pscan-chip | 2 | {bio}
|
@@ -188,7 +187,6 @@ Last-Update: Thu, 16 Jul 2020 01:42:04 +0000
plasmidseeker | 1 | {bio}
|
q2templates | 1 | {bio}
|
rambo-k | 1 | {bio}
|
- relion | 1 | {bio}
|
seqan | 1 | {bio-dev}
|
sift | 1 | {bio}
|
stringtie | 1 | {bio,covid-19}
|
@@ -272,5 +270,5 @@ Last-Update: Thu, 16 Jul 2020 01:42:04 +0000
pycoqc | -1 | {covid-19,bio}
|
shovill | -1 | {bio,covid-19}
|
yanagiba | -1 | {bio,covid-19}
|
-(299 rows)
+(297 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/35aaf5aa763b8422a635f36590e0e1344f533ebd
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/35aaf5aa763b8422a635f36590e0e1344f533ebd
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