Dear Andreas, This all boils down to the fact that this unit test is badly designed: it basically maximizes a function from initial random values. I some particular combinations of initial values though, the convergence may fail or take too much time. I will redesign the test, but do not have time at the moment. Would it be possible to just deactivate that test for now?
In the meantime I also found more symbols errors in libbpp-popgen and I fixed that. I also propagated your modification from bpp-phyl to bpp-seq and bpp-popgen. On a side note: how can I change my email address (the one that appears in the changelog file) ? That one is now deprecated. Best regards, Julien. On Fri, Mar 8, 2019 at 9:36 AM Julien Y. Dutheil <jy.duth...@gmail.com> wrote: > Dear Andreas, > > Will give it a look asap. > > Best, > > Julien. > > On Fri, Mar 8, 2019 at 9:34 AM Julien Yann Dutheil < > julien.duth...@univ-montp2.fr> wrote: > >> Dear Andreas, >> >> Will give it a look asap. >> >> Best, >> >> Julien. >> >> On Fri, Mar 8, 2019 at 6:30 AM Andreas Tille <ti...@debian.org> wrote: >> >>> Hi Julien, >>> >>> after fixing bug #923457 I realised that the package does not >>> build on all architectures[1]. S390x fails with[2] >>> >>> 4/14 Test #5: test_likelihood_nh ...............***Failed 2.44 sec >>> >>> / 1 >>> - 2 >>> \ 3 >>> - 4 >>> / 5 >>> - 6 >>> \ 7 >>> - 8 >>> / 9 >>> - 10 >>> \ 11 nodes loaded. >>> Theta0 set to 0.444785 >>> Theta1 set to 0.137341 >>> Theta2 set to 0.219281 >>> Theta3 set to 0.759382 >>> Theta4 set to 0.549516 >>> Theta5 set to 0.925583 >>> Theta6 set to 0.527333 >>> Theta7 set to 0.891561 >>> Theta8 set to 0.331932 >>> Theta9 set to 0.523327 >>> Initializing data structure............: Done. >>> Number of distinct sites...............: 363 >>> Initializing data structure............: Done. >>> Number of distinct sites...............: 363 >>> >>> Optimizing... / 1 >>> Optimizing... - 2 >>> Optimizing... \ 3 >>> Optimizing... - 4 >>> Optimizing... / 5 >>> Optimizing... - 6 >>> Optimizing... \ 7 >>> Optimizing... - 8 >>> Optimizing... / 9 >>> Optimizing... - 10 >>> Optimizing... \ 11 >>> Optimizing... - 12 >>> Optimizing... / 13 >>> Optimizing... - 14 >>> >>> >>> Optimizing... / 1 >>> Optimizing... - 2 >>> Optimizing... \ 3 >>> Optimizing... - 4 >>> Optimizing... / 5 >>> Optimizing... - 6 >>> Optimizing... \ 7 >>> Optimizing... - 8 >>> Optimizing... / 9 >>> Optimizing... - 10 >>> Optimizing... \ 11 >>> Optimizing... - 12 >>> Optimizing... / 13 >>> Optimizing... - 14 >>> >>> 15: 5347.92 15: 5347.92 >>> 0.516673 0.516673 >>> 0.184681 0.184681 >>> 0.209158 0.209158 >>> 0.795359 0.795359 >>> 0.489372 0.489372 >>> 0.918414 0.918414 >>> 0.489537 0.489537 >>> 0.913968 0.913968 >>> 0.180359 0.180359 >>> 0.797456 0.797456 >>> Initializing data structure............: Done. >>> Number of distinct sites...............: 365 >>> Initializing data structure............: Done. >>> Number of distinct sites...............: 365 >>> >>> Optimizing... / 1 >>> Optimizing... - 2 >>> Optimizing... \ 3 >>> Optimizing... - 4 >>> Optimizing... / 5 >>> Optimizing... - 6 >>> Optimizing... \ 7 >>> Optimizing... - 8 >>> Optimizing... / 9 >>> Optimizing... - 10 >>> Optimizing... \ 11 >>> Optimizing... - 12 >>> Optimizing... / 13 >>> Optimizing... - 14 >>> Optimizing... \ 15 >>> Optimizing... - 16 >>> Optimizing... / 17 >>> >>> >>> Optimizing... / 1 >>> Optimizing... - 2 >>> Optimizing... \ 3 >>> Optimizing... - 4 >>> Optimizing... / 5 >>> Optimizing... - 6 >>> Optimizing... \ 7 >>> Optimizing... - 8 >>> Optimizing... / 9 >>> Optimizing... - 10 >>> Optimizing... \ 11 >>> Optimizing... - 12 >>> Optimizing... / 13 >>> Optimizing... - 14 >>> Optimizing... \ 15 >>> Optimizing... - 16 >>> Optimizing... / 17 >>> >>> 18: 5391.43 18: 5391.43 >>> 0.60777 0.60777 >>> 0.127151 0.127151 >>> 0.189039 0.189039 >>> 0.788612 0.788612 >>> 0.564763 0.564763 >>> 0.941319 0.941319 >>> 0.565297 0.565297 >>> 0.844854 0.844854 >>> 0.357532 0.357532 >>> 0.717998 0.717998 >>> Initializing data structure............: Done. >>> Number of distinct sites...............: 375 >>> Initializing data structure............: Done. >>> Number of distinct sites...............: 375 >>> >>> Optimizing... / 1 >>> Optimizing... - 2 >>> Optimizing... \ 3 >>> Optimizing... - 4 >>> Optimizing... / 5 >>> Optimizing... - 6 >>> Optimizing... \ 7 >>> Optimizing... - 8 >>> Optimizing... / 9 >>> Optimizing... - 10 >>> Optimizing... \ 11 >>> Optimizing... - 12 >>> Optimizing... / 13 >>> Optimizing... - 14 >>> >>> >>> Optimizing... / 1 >>> Optimizing... - 2 >>> Optimizing... \ 3 >>> Optimizing... - 4 >>> Optimizing... / 5 >>> Optimizing... - 6 >>> Optimizing... \ 7 >>> Optimizing... - 8 >>> Optimizing... / 9 >>> Optimizing... - 10 >>> Optimizing... \ 11 >>> Optimizing... - 12 >>> Optimizing... / 13 >>> Optimizing... - 14 >>> >>> 15: 5401.83 15: 5401.83 >>> 0.419181 0.419181 >>> 0.140299 0.140299 >>> 0.295 0.295 >>> 0.900203 0.900203 >>> 0.411605 0.411605 >>> 0.919716 0.919716 >>> 0.563041 0.563041 >>> 0.813833 0.813833 >>> 0.194868 0.194868 >>> 0.801315 0.801315 >>> 0.444785 0.514541 0.514541 >>> 0.137341 0.15071 0.15071 >>> 0.219281 0.231066 0.231066 >>> 0.759382 0.828058 0.828058 >>> 0.549516 0.48858 0.48858 >>> 0.925583 0.926483 0.926483 >>> 0.527333 0.539292 0.539292 >>> 0.891561 0.857552 0.857552 >>> 0.331932 0.244253 0.244253 >>> 0.523327 0.772256 0.772256 >>> >>> >>> ... >>> >>> 93% tests passed, 1 tests failed out of 14 >>> >>> Total Test time (real) = 31.15 sec >>> >>> The following tests FAILED: >>> 5 - test_likelihood_nh (Failed) >>> >>> >>> I remember that I once had even a test failure on my local amd64 - so >>> this test might be a bit undetermined. Please confirm this and I'd be >>> happy if you could send an *as simple as possible* patch or simply >>> deactivate the patch. We are in deep freeze and need to find a quick >>> and also simple solution. >>> >>> Kind regards >>> >>> Andreas. >>> >>> >>> [1] https://buildd.debian.org/status/package.php?p=libbpp-phyl >>> [2] >>> https://buildd.debian.org/status/fetch.php?pkg=libbpp-phyl&arch=s390x&ver=2.4.1-2&stamp=1551477555&raw=0 >>> >>> -- >>> http://fam-tille.de >>> >>> >> >> -- >> Julien Y. Dutheil, Ph-D >> 0 (+49) 6421 178 986 >> >> § Max Planck Institute for Evolutionary Biology >> Molecular Systems Evolution >> Department of Evolutionary Genetics >> Plön -- GERMANY >> >> § Institute of Evolutionary Sciences - Montpellier >> University of Montpellier 2 -- FRANCE >> > > > -- > Julien Y. Dutheil, Ph-D > 0 (+49) 4522 763 298 > > § Max Planck Institute for Evolutionary Biology > Molecular Systems Evolution > Department of Evolutionary Genetics > Plön -- GERMANY > > § Institute of Evolutionary Sciences - Montpellier > University of Montpellier 2 -- FRANCE > -- Julien Y. Dutheil, Ph-D 0 (+49) 4522 763 298 § Max Planck Institute for Evolutionary Biology Molecular Systems Evolution Department of Evolutionary Genetics Plön -- GERMANY § Institute of Evolutionary Sciences - Montpellier University of Montpellier 2 -- FRANCE
