Your message dated Fri, 01 Mar 2019 21:20:16 +0000
with message-id <e1gzpzo-0009tc...@fasolo.debian.org>
and subject line Bug#923457: fixed in libbpp-phyl 2.4.1-2
has caused the Debian Bug report #923457,
regarding libbpp-phyl: FTBFS (dh_makeshlibs fails)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
923457: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=923457
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:libbpp-phyl
Version: 2.4.1-1
Severity: serious
Tags: ftbfs
Dear maintainer:
I tried to build this package in buster but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc
-DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
"-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON
-DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ..
-- The CXX compiler identification is GNU 8.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
[... snipped ...]
_ZTTN3bpp9LLG08_UL3E@Base 2.4.1
_ZTTN3bpp9RE08CodonE@Base 2.4.1
_ZTVN3bpp10BppBooleanE@Base 2.4.1
- _ZTVN3bpp11IOExceptionE@Base 2.4.1
+#MISSING: 2.4.1-1# _ZTVN3bpp11IOExceptionE@Base 2.4.1
_ZTVN3bpp11LG10_EX_EHO13EmbeddedModelE@Base 2.4.1
_ZTVN3bpp11LG10_EX_EHOE@Base 2.4.1
_ZTVN3bpp11NaNListenerE@Base 2.4.1
@@ -6100,7 +6133,7 @@
_ZTVN3bpp23IODistanceMatrixFactoryE@Base 2.4.1
_ZTVN3bpp23IOFrequenciesSetFactoryE@Base 2.4.1
_ZTVN3bpp23MarkovModulatedStateMapE@Base 2.4.1
- _ZTVN3bpp23NotImplementedExceptionE@Base 2.4.1
+#MISSING: 2.4.1-1# _ZTVN3bpp23NotImplementedExceptionE@Base 2.4.1
_ZTVN3bpp24BppOFrequenciesSetFormatE@Base 2.4.1
_ZTVN3bpp24CladogramDrawBranchEventE@Base 2.4.1
_ZTVN3bpp24ConstantRateDistributionE@Base 2.4.1
@@ -6117,12 +6150,12 @@
_ZTVN3bpp24TripletSubstitutionModelE@Base 2.4.1
_ZTVN3bpp24TsTvSubstitutionRegisterE@Base 2.4.1
_ZTVN3bpp25AbstractSubstitutionModelE@Base 2.4.1
- _ZTVN3bpp25AlphabetMismatchExceptionE@Base 2.4.1
+#MISSING: 2.4.1-1# _ZTVN3bpp25AlphabetMismatchExceptionE@Base 2.4.1
_ZTVN3bpp25BppOMultiTreeReaderFormatE@Base 2.4.1
_ZTVN3bpp25BppOMultiTreeWriterFormatE@Base 2.4.1
_ZTVN3bpp25BppOTransitionModelFormatE@Base 2.4.1
_ZTVN3bpp25FullProteinFrequenciesSetE@Base 2.4.1
- _ZTVN3bpp25IndexOutOfBoundsExceptionE@Base 2.4.1
+#MISSING: 2.4.1-1# _ZTVN3bpp25IndexOutOfBoundsExceptionE@Base 2.4.1
_ZTVN3bpp25MixedSubstitutionModelSetE@Base 2.4.1
_ZTVN3bpp25PropertyNotFoundExceptionE@Base 2.4.1
_ZTVN3bpp25SequenceNotFoundExceptionE@Base 2.4.1
@@ -8891,6 +8924,7 @@
_ZTv0_n416_NK3bpp20AbstractWrappedModel17getFrequenciesSetEv@Base 2.4.1
_ZTv0_n416_NK3bpp20ConstantDistribution13getUpperBoundEv@Base 2.4.1
_ZTv0_n416_NK3bpp22AbstractTreeLikelihood16getNumberOfSitesEv@Base 2.4.1
+ _ZTv0_n416_NK3bpp24AlignedSequenceContainer16getNumberOfSitesEv@Base 2.4.1-1
_ZTv0_n416_NK3bpp24OneChangeTransitionModel17getFrequenciesSetEv@Base 2.4.1
_ZTv0_n416_NK3bpp27CodonAdHocSubstitutionModel17getFrequenciesSetEv@Base 2.4.1
_ZTv0_n416_NK3bpp28AbstractDiscreteDistribution13getUpperBoundEv@Base 2.4.1
dh_makeshlibs: failing due to earlier errors
make[1]: *** [debian/rules:15: override_dh_makeshlibs] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:10: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned
exit status 2
--------------------------------------------------------------------------------
The build was made in my autobuilder with "dpkg-buildpackage -A"
and it also fails here:
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libbpp-phyl.html
If this is really a bug in one of the build-depends, please use reassign and
affects,
so that this is still visible in the BTS web page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: libbpp-phyl
Source-Version: 2.4.1-2
We believe that the bug you reported is fixed in the latest version of
libbpp-phyl, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 923...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated libbpp-phyl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 01 Mar 2019 15:52:37 +0100
Source: libbpp-phyl
Binary: libbpp-phyl-dev libbpp-phyl12
Architecture: source
Version: 2.4.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
libbpp-phyl-dev - Bio++ Phylogenetic library development files
libbpp-phyl12 - Bio++ Phylogenetic library
Closes: 923457
Changes:
libbpp-phyl (2.4.1-2) unstable; urgency=medium
.
[ Jelmer Vernooij ]
* Use secure copyright file specification URI.
* Trim trailing whitespace.
.
[ Michael R. Crusoe ]
* libbpp-phyl-dev: Multi-Arch: same & add missing ${devlibs:Depends}
* Remove trailing whitespace in debian/copyright
* Standards-Version: 4.3.0
.
[ Andreas Tille ]
* Adapt symbols to new gcc version
Closes: #923457
* More sensible way to provide symbols amd64 only
Checksums-Sha1:
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147aed5a92a73699cee78183dcc55527a6a8b95c 56412
libbpp-phyl_2.4.1-2.debian.tar.xz
Checksums-Sha256:
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libbpp-phyl_2.4.1-2.dsc
326fc2496311edf955b939db10ac187c6d588c40004949d391fdf29cb4250173 56412
libbpp-phyl_2.4.1-2.debian.tar.xz
Files:
7a58eaebefe331a041f38c6ce00fb32d 2153 science optional libbpp-phyl_2.4.1-2.dsc
a8f30a7343ed504f58d1cbf465e58d58 56412 science optional
libbpp-phyl_2.4.1-2.debian.tar.xz
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--- End Message ---
