Hi Rene,
I asked them and as soon as I get an update I will post it here. My
colleague also mentioned that it could be something related to the linker.
In any case, I am really happy that the installation got this far and I
am hoping to use deal.II asap in the cluster. Thank you again, will keep
you posted :))
Best,
Tuanny
On 04.06.2017 14:57, Rene Gassmoeller wrote:
Hi Tuanny,
That is good to hear. Unfortunately I have not seen the error message
before. AtpSigHandler seems to be some cray specific library, and it
is a bit surprising that your linker does not seem to find it. Maybe
you can try finding out in which module it is packaged or ask your
cluster support for help. To me this does not look like a deal.II
specific problem.
Another idea would be to check if /usr/bin/ld.gold is the linker you
should use, or if the build system picks up he wrong linker.
Best
Rene
-------- Original message --------
From: Tuanny Cajuhi <trmcaj...@gmail.com>
Date: 6/3/2017 21:13 (GMT-05:00)
To: dealii@googlegroups.com
Subject: Re: [deal.II] Re: get errors when installing dealii on
openSUSE Leap 42.1 by using candi
Hi Rene,
your explanation helped me a lot!! :)) I was able to run up to this point:
[100%] Building CXX object
source/numerics/CMakeFiles/obj_numerics_release.dir/vector_tools_rhs.cc.o
Linking CXX shared library ../lib/libdeal_II.g.so
/usr/bin/ld.gold: error: cannot find -lAtpSigHandler
/usr/bin/ld.gold: error: cannot find -lAtpSigHCommData
collect2: error: ld returned 1 exit status
make[2]: *** [lib/libdeal_II.g.so.8.5.0] Error 1
make[1]: *** [source/CMakeFiles/deal_II.g.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[100%] Built target obj_numerics_release
make: *** [all] Error 2
Failure with exit status: 2
Exit message: There was a problem building dealii v8.5.0.
Have you ever had this error? One colleague of mine got the same error
when installing everything manually. Could it be something related to
the cray, e.g. additional module?
Thank you!
Best,
Tuanny
On 03.06.2017 20:14, Rene Gassmöller wrote:
I updated the github branch. The file is not longer at the old
position, instead take a look at: https://github.com/dealii/candi/pull/31
Best
Rene
Am Freitag, 2. Juni 2017 14:55:45 UTC-4 schrieb Rene Gassmöller:
Hi Tuanny,
I happened to install deal.II on a Cray over the last days, and
both compiled everything by hand and (afterwards) decided to
write a candi script for it. Keep in mind that my instructions
are for my specific setting and application, i.e. I compile
deal.II with the packages p4est, trilinos, and petsc only, and do
not know about other packages. The cluster is also a very
specific system (Lonestar 5, of the Texas Advanced Computing
Center), but yours is likely at least similar. Anyway, I hope
this is of help to you.
The candi platform file with instructions on how to set up the
environment is here:
https://github.com/gassmoeller/candi/blob/lonestar_config/deal.II-toolchain/platforms/lonestar5.platform
<https://github.com/gassmoeller/candi/blob/lonestar_config/deal.II-toolchain/platforms/lonestar5.platform>
You can download it and use it with candi by adding the option
--platform=FILENAME where FILENAME contains the full path to this
file. On my cluster I had two problems with candi that I needed
to change. You can find the modifications I did here:
https://github.com/dealii/candi/pull/29
<https://github.com/dealii/candi/pull/29> and
https://github.com/dealii/candi/pull/30
<https://github.com/dealii/candi/pull/30>. They are not yet part
of candi, so you will need to include them manually.
If you decide to compile manually instead let me know, I also
have those commands somewhere (not as nicely formatted). The most
important point are the loaded modules, environment variables,
and compiler options all of which you can see inside the candi
script.
Hope that helps a bit,
Rene
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