Hi Rene,
your explanation helped me a lot!! :)) I was able to run up to this point:
[100%] Building CXX object
source/numerics/CMakeFiles/obj_numerics_release.dir/vector_tools_rhs.cc.o
Linking CXX shared library ../lib/libdeal_II.g.so
/usr/bin/ld.gold: error: cannot find -lAtpSigHandler
/usr/bin/ld.gold: error: cannot find -lAtpSigHCommData
collect2: error: ld returned 1 exit status
make[2]: *** [lib/libdeal_II.g.so.8.5.0] Error 1
make[1]: *** [source/CMakeFiles/deal_II.g.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[100%] Built target obj_numerics_release
make: *** [all] Error 2
Failure with exit status: 2
Exit message: There was a problem building dealii v8.5.0.
Have you ever had this error? One colleague of mine got the same error
when installing everything manually. Could it be something related to
the cray, e.g. additional module?
Thank you!
Best,
Tuanny
On 03.06.2017 20:14, Rene Gassmöller wrote:
I updated the github branch. The file is not longer at the old
position, instead take a look at: https://github.com/dealii/candi/pull/31
Best
Rene
Am Freitag, 2. Juni 2017 14:55:45 UTC-4 schrieb Rene Gassmöller:
Hi Tuanny,
I happened to install deal.II on a Cray over the last days, and
both compiled everything by hand and (afterwards) decided to write
a candi script for it. Keep in mind that my instructions are for
my specific setting and application, i.e. I compile deal.II with
the packages p4est, trilinos, and petsc only, and do not know
about other packages. The cluster is also a very specific system
(Lonestar 5, of the Texas Advanced Computing Center), but yours is
likely at least similar. Anyway, I hope this is of help to you.
The candi platform file with instructions on how to set up the
environment is here:
https://github.com/gassmoeller/candi/blob/lonestar_config/deal.II-toolchain/platforms/lonestar5.platform
<https://github.com/gassmoeller/candi/blob/lonestar_config/deal.II-toolchain/platforms/lonestar5.platform>
You can download it and use it with candi by adding the option
--platform=FILENAME where FILENAME contains the full path to this
file. On my cluster I had two problems with candi that I needed to
change. You can find the modifications I did here:
https://github.com/dealii/candi/pull/29
<https://github.com/dealii/candi/pull/29> and
https://github.com/dealii/candi/pull/30
<https://github.com/dealii/candi/pull/30>. They are not yet part
of candi, so you will need to include them manually.
If you decide to compile manually instead let me know, I also have
those commands somewhere (not as nicely formatted). The most
important point are the loaded modules, environment variables, and
compiler options all of which you can see inside the candi script.
Hope that helps a bit,
Rene
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