Manju, I agree with Marcin's answer. I have opened your CIF file in a text editor and am comparing it to a CIF I have on hand for deposition. The CIF file format in your file is not the same as what I have ready for deposition. You can try to use your PDB file and convert it to CIF for deposition using the PDB service for this: https://pdb-extract.wwpdb.org/
See if this corrects your issue. Best, Nick On Sun, Jan 5, 2025 at 10:52 AM Manjula Ramu <manjula....@gmail.com> wrote: > Hi Nicholas, > yes, I renamed the file I tried too. > I still get the error. > > Thanks, > > Manju > > > > > <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.nimhans.kar.nic.in%2F&data=05%7C02%7Cndclark2%40g-mail.buffalo.edu%7C47d23101594247b9888f08dd2da0f705%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638716891677944265%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=YxdHps%2BE29OZml22fxA0xQ%2BuWFfbtXnF9mghJAh2IBI%3D&reserved=0> > > > On Sun, Jan 5, 2025 at 10:49 AM Nicholas Clark <ndcla...@buffalo.edu> > wrote: > >> Hi Maju, >> >> This might be a simple solution, but have you tried removing the ".pdb" >> from the ".pdb.cif" file name (i.e. renaming the file)? Maybe it's >> confusing the file reading package on the validation server? >> >> Best, >> >> Nick >> >> On Sun, Jan 5, 2025 at 10:02 AM Manjula Ramu <manjula....@gmail.com> >> wrote: >> >>> Dear community, >>> >>> I encountered an issue while uploading data (attached) to generate the >>> validation report in Phenix. The error message states: >>> >>> "The PDB server reports a failure with your data. Please check that your >>> input file follows the CIF specifications." >>> >>> I faced the same error with previously uploaded files as well. Since I >>> suspect there may not be any actual errors in the CIF file, I would greatly >>> appreciate your help in identifying and resolving this issue. >>> >>> Thanks and Regards, >>> >>> Manju >>> >>> >>> >>> >>> <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.nimhans.kar.nic.in%2F&data=05%7C02%7Cndclark2%40g-mail.buffalo.edu%7C47d23101594247b9888f08dd2da0f705%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638716891677956339%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=EOf88xqdKdDVyQNJe8iQJmmsih6juBTbLIfegwp4O1o%3D&reserved=0> >>> >>> ------------------------------ >>> >>> To unsubscribe from the CCP4BB list, click the following link: >>> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 >>> <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jiscmail.ac.uk%2Fcgi-bin%2FWA-JISC.exe%3FSUBED1%3DCCP4BB%26A%3D1&data=05%7C02%7Cndclark2%40g-mail.buffalo.edu%7C47d23101594247b9888f08dd2da0f705%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638716891677968169%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=8oinN99La0BChInkTULeMdZQHo%2FDCXMKE5NbMsWf8js%3D&reserved=0> >>> >> >> >> -- >> Nicholas D. Clark, PhD (He/Him) >> University at Buffalo >> Department of Structural Biology >> Jacob's School of Medicine & Biomedical Sciences >> 955 Main Street >> Buffalo, NY 14203 >> > -- Nicholas D. Clark, PhD (He/Him) University at Buffalo Department of Structural Biology Jacob's School of Medicine & Biomedical Sciences 955 Main Street Buffalo, NY 14203 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
