I’ve just been playing with a difference map to check something. If you fail to set the map as a difference map (either when opening the map initially, or using Calculate->Map Tools->Set map is a difference map), there’s nothing in the Display Manager->Properties window that tells you. I was wondering if that could be the issue, if the contour colour chosen when it isn’t set as a difference map doesn’t show up against the other map.
Randy > On 2 Aug 2023, at 14:32, Andrea Smith <andrea.sm...@uochb.cas.cz> wrote: > > Dear Eleanor, > > yes, I made the printscreen with the setting that shows both maps contoured > at 0.08 = 3 rmsd. > > I also attach a printscreen from a site where I believe a Zn ion is bound > (from my condition). Can see that Wincoot is drawing the map wrong... > Andrea > > > > On Wednesday, August 02, 2023 15:28 CEST, Eleanor Dodson > <0000176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk> wrote: > >> >> Hmmm -are the two ano maps contoured at the same level? >> You can check this by setting the SCROLL option to the ano map. >> The 2mFo-DFc maps look pretty identical..which suggests the two input mtz >> files are similar. >> You can get more information by viewing the inputs to make sure the values >> are the same.. >> Eleanor >> On Wed, 2 Aug 2023 at 13:53, Andrea Smith <andrea.sm...@uochb.cas.cz> >> wrote: >> Dear all, >> >> I used refmac in CCP4Cloud and then I opened the generated .pdb and .mtz >> from the CCP4Cloud job both in Linux Coot 0.9.6. and WinCoot 0.9.6. I can >> see different anomalous maps in Coot and Wincoot - see attached printscreen >> where on the left there is a green electron density between the aspartates >> while on the right there is none. I tried to search if this is a bug but >> couldn't find info about this. >> >> Am I doing something wrong? Do I have a local software issue? >> >> Any advice would be appreciated, best, >> Andrea >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 <Zn.png> ----- Randy J. Read Department of Haematology, University of Cambridge Cambridge Institute for Medical Research Tel: +44 1223 336500 The Keith Peters Building Hills Road E-mail: rj...@cam.ac.uk Cambridge CB2 0XY, U.K. www-structmed.cimr.cam.ac.uk ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
