It looks like it is not applying the 90 degree phase shift for anomalous data.
Best wishes, Jon Cooper. jon.b.coo...@protonmail.com Sent from Proton Mail mobile -------- Original Message -------- On 2 Aug 2023, 14:32, Andrea Smith wrote: > Dear Eleanor, > > yes, I made the printscreen with the setting that shows both maps contoured > at 0.08 = 3 rmsd. > > I also attach a printscreen from a site where I believe a Zn ion is bound > (from my condition). Can see that Wincoot is drawing the map wrong... > Andrea > > On Wednesday, August 02, 2023 15:28 CEST, Eleanor Dodson > <0000176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk> wrote: > >> Hmmm -are the two ano maps contoured at the same level? >> You can check this by setting the SCROLL option to the ano map. >> >> The 2mFo-DFc maps look pretty identical..which suggests the two input mtz >> files are similar. >> You can get more information by viewing the inputs to make sure the values >> are the same.. >> Eleanor >> >> On Wed, 2 Aug 2023 at 13:53, Andrea Smith <andrea.sm...@uochb.cas.cz> wrote: >> >>> Dear all, >>> >>> I used refmac in CCP4Cloud and then I opened the generated .pdb and .mtz >>> from the CCP4Cloud job both in Linux Coot 0.9.6. and WinCoot 0.9.6. I can >>> see different anomalous maps in Coot and Wincoot - see attached printscreen >>> where on the left there is a green electron density between the aspartates >>> while on the right there is none. I tried to search if this is a bug but >>> couldn't find info about this. >>> >>> Am I doing something wrong? Do I have a local software issue? >>> >>> Any advice would be appreciated, best, >>> Andrea >>> >>> --------------------------------------------------------------- >>> >>> To unsubscribe from the CCP4BB list, click the following link: >>> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 >> >> --------------------------------------------------------------- >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > --------------------------------------------------------------- > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
