Hi Abhilash,
You should also be able to do this with the ProDy python package.
Once installed open a python terminal and type the following:
from prody import *
biomols = parsePDB(list_of_ids, biomol=True, extend_biomol=True) # this will
take files in whichever format is available
for b in biomols:
writePDB(b.getTitle().replace(' ', '_'), b)
You would have to define something in list_of_ids beforehand e.g.
list_of_ids = ['3h5v', '3h5w']
or
list_of_ids = ['cifs/3h5v.cif', 'cifs/3h5w.cif']
Best wishes
James
On 11 Jul 2022, at 00:31, Abhilasha Thakur <[email protected]> wrote:
Hello,
I have a long list of PDB ids and I needed the all the biological assembly for
each PDB Id, so in this case how I can get these biological assembly in PDB
format.
Please guide me how to get these assemblies, manually it wouldn't be possible
for each PDB I'd.
Thankyou
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