To add to Pavel’s comments, it is also possible to do the automated model 
building in Phenix:

        http://www.phenix-online.org/documentation/reference/map_to_model.html

As Pavel said: there is Phenix mailing list for Phenix-specific questions


> On May 17, 2017, at 10:24 AM, Paul Emsley <pems...@mrc-lmb.cam.ac.uk> wrote:
> 
> Hi, all.
> 
> I have collected cryoEM data and want to use Coot and CCP4 program to  build 
> model and to refine it.
> 
> 1. What is the steps to do this?
> 2. How do I convert cryoEM map file to MTZ file?
> 3. Can I also use Phenix for this purpose?
> 
> Thanks to all for your help in advance.

-- 
Paul Adams
Division Director, Molecular Biophysics & Integrated Bioimaging, Lawrence 
Berkeley Lab
Division Deputy for Biosciences, Advanced Light Source, Lawrence Berkeley Lab
Adjunct Professor, Department of Bioengineering, U.C. Berkeley
Vice President for Technology, the Joint BioEnergy Institute
Laboratory Research Manager, ENIGMA Science Focus Area

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