Hello, Rex,
I think that Topp program could be useful for you in terms of structures
comparison. It will give to you rsmd and distances between corresponding
residues.
01.04.2013 18:07, Rex Palmer ?????:
We have two refined protein structures of similar proteins. There are
differences in the amino acid sequences however and also in the bound
waters and ligands.
Does anyone know of a program which we could use in order to quantify
the structural differences associated with these factors?
Rex Palmer
http://www.bbk.ac.uk/biology/our-staff/emeritus-staff
http://rexpalmer2010.homestead.com
--
Eugene Osipov
Junior Research Scientist
Laboratory of Enzyme Engineering
A.N. Bach Institute of Biochemistry
Russian Academy of Sciences
Leninsky pr. 33, 119071 Moscow, Russia
e-mail: [email protected]
