We have two refined protein structures of similar proteins. There are 
differences in the amino acid sequences however and also in the bound waters 
and ligands.
Does anyone know of a program which we could use in order to quantify the 
structural differences associated with these factors?

 
Rex Palmer
http://www.bbk.ac.uk/biology/our-staff/emeritus-staff
http://rexpalmer2010.homestead.com

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