Hi Wenhe, if you have already your alignment file you could also load it in Charlie Bonds "ALINE". The program allows to color by similarity in grayscale as well as in colour mode.
Regards Christian Am Freitag 03 Februar 2012 06:32:08 schrieb WENHE ZHONG: > Dear members, > > Apologize for this off-topic question. I am looking for a protein sequence > alignment tool which is capable to generate a particular output file > similar to the attached format (please see the attached picture). I have > been looking at some popular programs but none of them can show the > conserved amino acids by colored blocks as shown in the attached file. > > Maybe some of you have seen some programs can do this? Thank you. > > King regards, > Wenhe >
