Dear Wenhe, have you looked at http://www.jalview.org/ ? is this what you are looking for? http://www.jalview.org/examples/examples3.html ciao, Sebastiano
On Feb 3, 2012, at 6:32 AM, WENHE ZHONG wrote: > Dear members, > > Apologize for this off-topic question. I am looking for a protein sequence > alignment tool which is capable to generate a particular output file similar > to the attached format (please see the attached picture). I have been looking > at some popular programs but none of them can show the conserved amino acids > by colored blocks as shown in the attached file. > > Maybe some of you have seen some programs can do this? Thank you. > > King regards, > Wenhe > <alignment.png> -- Sebastiano Pasqualato, PhD Crystallography Unit Department of Experimental Oncology European Institute of Oncology IFOM-IEO Campus via Adamello, 16 20139 - Milano Italy tel +39 02 9437 5172 fax +39 02 9437 5990
