Rajesh I use adxv (as well as xemacs, xdsview, imosflm, hklview, ipdisp etc) over ssh/Cygwin X11 from Windows XP to a Centos (like RedHat) server with no problems at all.
I suspect your xming either just doesn't have the requisite X11 libs or somehow they have not gotten installed on your system. Can you try Cygwin/X11, it's very easy to install. Cheers -- Ian On 22 November 2011 13:49, Rajesh kumar <ccp4...@hotmail.com> wrote: > Dear Tim, > Yes, I have windows 7 computer and use ccp4 and phenix through xming/putty > and I run them over linux lab computer. > Sorry if I have confused you all with insufficient information. > On the lab linux system, I installed everything you suggested in BASH and > it works but not completely. > Core manager kind of not interested to look in to it and I dont know much to > understand everything you nice people saying here. > So instead I used idiffdisp and it opens the image. But wanted adxv to work > thats all. > Thanks > Raj >> Date: Tue, 22 Nov 2011 14:41:00 +0100 >> From: t...@shelx.uni-ac.gwdg.de >> To: ccp4...@hotmail.com >> CC: CCP4BB@JISCMAIL.AC.UK >> Subject: Re: [ccp4bb] adxv >> >> -----BEGIN PGP SIGNED MESSAGE----- >> Hash: SHA1 >> >> Dear Rajesh, >> >> are you saying that the computer you are sitting in front of is a >> windows computer? >> Are you sure you have been using CCP4 and phenix through an >> ssh-connection and not the respective windows-binaries? >> >> I am not familiar with windows and the possible existence of >> X11-clients, but I would think that most suggestions to you assumed that >> your client computer was also a linux-machine. >> >> Cheers, >> Tim >> >> On 11/22/2011 02:27 PM, Rajesh kumar wrote: >> > >> > I don't know if I need that installed on my windows computer terminal.On >> > the server also I could run adxv. Thought of using other ccp4 utilities. >> > Thanks for everyone for the help. I give up. >> > Regards,Rajesh >> > >> >> Date: Mon, 21 Nov 2011 11:36:14 -0500 >> >> From: ber...@upstate.edu >> >> Subject: Re: [ccp4bb] adxv >> >> To: CCP4BB@JISCMAIL.AC.UK >> >> >> >> yum install lesstif ? >> >> >> >> but wouldn't the motif stuff be required for the X-server, i.e. your >> >> terminal, not for the >> >> server running adxv? >> >> >> >> Rajesh kumar wrote: >> >>> Dear Mark, >> >>> >> >>> $ locate XKeysymDB - didnt come with any thing suggests probably >> >>> openmotif lib is not >> >>> installed. >> >>> I linux server has Fedora and I am using latest version of Adxv so >> >>> details on the sbgrid >> >>> suggest its same problem. >> >>> >> >>> So how would I fix this. >> >>> >> >>> Thanks for your time. >> >>> >> >>> Regards >> >>> Rajesh >> >>> >> >>> >> >>> > Date: Sun, 20 Nov 2011 23:18:32 +0000 >> >>> > Subject: Re: [ccp4bb] adxv >> >>> > From: mark.x.bro...@gmail.com >> >>> > To: ccp4...@hotmail.com >> >>> > CC: CCP4BB@jiscmail.ac.uk >> >>> > >> >>> > Dear Rajesh, >> >>> > Are you using the Openmotif library? If so, do you >> >>> > have an XKeysymDB file installed? >> >>> > In as shell, issue: >> >>> > $ locate XKeysymDB >> >>> > You may need to symlink it to /usr/X11R6/lib/X11/XKeysymDB if it is >> >>> > elsewhere [1]. >> >>> > I suspect you're not the only one to have seen this [2]. >> >>> > >> >>> > I hope this helps. >> >>> > >> >>> > Mark >> >>> > [1] >> >>> >> >>> ftp://ftp.parallelgeo.com/SPW_Products/Linux/Current_Release/ReadMe_for_recent_Linux_distributions.txt >> >>> > [2] http://sbgrid.org/news/newsletters/2009/06 (search for the >> >>> > string "adxv") >> >>> > >> >>> > >> >>> > On 20 November 2011 19:45, Rajesh kumar <ccp4...@hotmail.com> wrote: >> >>> > > >> >>> > > Dear Tim, >> >>> > > Thanks. Your suggestion of adding to PATH works and its not >> >>> > > completely functional may >> >>> be due to the Ximg/ssh or some thing to do with display. >> >>> > > All three windows opened but couldn't open any image as it didn't >> >>> > > display in the list >> >>> of autoload window. Pattern shows *.0. >> >>> > > >> >>> > > $adxv pin8_1_180.img >> >>> > > >> >>> > > (standard_in) 1: parse error >> >>> > > (standard_in) 1: parse error >> >>> > > (standard_in) 1: parse error >> >>> > > beam_center x = pixels , mm >> >>> > > beam_center y = pixels , mm >> >>> > > distance = mm >> >>> > > overload = counts >> >>> > > pixelsize = 0.172 mm >> >>> > > wavelength = Angstroem >> >>> > > Adxv Version 1.9.4-beta >> >>> > > Copyright (C) 1994-2007 by Andrew Arvai, Area Detector Systems >> >>> > > Corporation >> >>> > > Using 24-bit TrueColor visual >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfActivate >> >>> > > Warning: ... found while parsing ':<Key>osfActivate: >> >>> > > ManagerParentActivate()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfBeginLine >> >>> > > Warning: ... found while parsing ':<Key>osfBeginLine: >> >>> > > ManagerGadgetTraverseHome()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfHelp >> >>> > > Warning: ... found while parsing ':<Key>osfHelp: >> >>> > > ManagerGadgetHelp()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfActivate >> >>> > > Warning: ... found while parsing ':<Key>osfActivate: >> >>> > > ManagerParentActivate()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfActivate >> >>> > > Warning: ... found while parsing ':<Key>osfActivate: >> >>> > > PrimitiveParentActivate()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfHelp >> >>> > > Warning: ... found while parsing ':<Key>osfHelp: Help()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfActivate >> >>> > > Warning: ... found while parsing ':<Key>osfActivate: >> >>> > > PrimitiveParentActivate()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfCancel >> >>> > > Warning: ... found while parsing ':<Key>osfCancel: MenuEscape()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfSelect >> >>> > > Warning: ... found while parsing ':<Key>osfSelect: >> >>> > > ArmAndActivate()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfActivate >> >>> > > Warning: ... found while parsing ':<Key>osfActivate: >> >>> > > PrimitiveParentActivate()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: Locale not supported for XmbTextListToTextProperty >> >>> > > Warning: Cannot convert XmString to compound text >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfPrimaryPaste >> >>> > > Warning: ... found while parsing ':m >> >>> > > <Key>osfPrimaryPaste:cut-primary()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfActivate >> >>> > > Warning: ... found while parsing ':<Key>osfActivate: >> >>> > > PrimitiveParentActivate()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfActivate >> >>> > > Warning: ... found while parsing ':<Key>osfActivate: >> >>> > > PrimitiveParentActivate()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfSelect >> >>> > > Warning: ... found while parsing ':<Key>osfSelect: >> >>> > > ArmAndActivate()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfPrimaryPaste >> >>> > > Warning: ... found while parsing ':m >> >>> > > <Key>osfPrimaryPaste:cut-primary()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfSelect >> >>> > > Warning: ... found while parsing ':<Key>osfSelect: >> >>> > > ManagerGadgetSelect()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfSelect >> >>> > > Warning: ... found while parsing ':<Key>osfSelect: >> >>> > > MenuBarGadgetSelect()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfActivate >> >>> > > Warning: ... found while parsing ':<Key>osfActivate: >> >>> > > ManagerParentActivate()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfHelp >> >>> > > Warning: ... found while parsing ':<Key>osfHelp: MenuHelp()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfActivate >> >>> > > Warning: ... found while parsing ':<Key>osfActivate: >> >>> > > PrimitiveParentActivate()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfActivate >> >>> > > Warning: ... found while parsing ':<Key>osfActivate: >> >>> > > DrawingAreaInput() >> >>> ManagerParentActivate()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfUp >> >>> > > Warning: ... found while parsing ':<Key>osfUp: DrawingAreaInput() >> >>> ManagerGadgetTraverseUp()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfSelect >> >>> > > Warning: ... found while parsing ':<Key>osfSelect: KeySelect()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfSelect >> >>> > > Warning: ... found while parsing ':<Key>osfSelect: KeySelect()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfCancel >> >>> > > Warning: ... found while parsing '<Key>osfCancel: MenuEscape()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfBeginLine >> >>> > > Warning: ... found while parsing ':s c <Key>osfBeginLine: >> >>> > > ListBeginDataExtend()' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: translation table syntax error: Unknown keysym name: >> >>> > > osfBeginLine >> >>> > > Warning: ... found while parsing ':c <Key>osfBeginLine: >> >>> > > ActionGrab(SWTopLine)' >> >>> > > Warning: String to TranslationTable conversion encountered errors >> >>> > > Warning: Locale not supported for XmbTextListToTextProperty >> >>> > > Warning: Cannot convert XmString to compound text >> >>> > > Warning: Locale not supported for XmbTextListToTextProperty >> >>> > > Warning: Cannot convert XmString to compound text >> >>> > > No such file: 0.172 >> >>> > > >> >>> > > > Date: Sat, 19 Nov 2011 22:27:25 +0100 >> >>> > > > From: t...@shelx.uni-ac.gwdg.de >> >>> > > > To: ccp4...@hotmail.com >> >>> > > > CC: CCP4BB@JISCMAIL.AC.UK >> >>> > > > Subject: Re: [ccp4bb] adxv >> >>> > > > >> >>> > > > -----BEGIN PGP SIGNED MESSAGE----- >> >>> > > > Hash: SHA1 >> >>> > > > >> >>> > > > Dear Raj, >> >>> > > > >> >>> > > > your first two error messages are because your 'current working >> >>> > > > directory' is not part of your bash's PATH variable. As you >> >>> > > > login, type >> >>> > > > export PATH=$PATH:/full/path/to/your/work/adxv >> >>> > > > then run adxv. >> >>> > > > >> >>> > > > I am not sure whether this will prevent the last error to occur, >> >>> > > > but >> >>> > > > since you can run other graphical programs there is a fair >> >>> > > > chance. >> >>> > > > >> >>> > > > Cheers, >> >>> > > > Tim >> >>> > > > >> >>> > > > On 11/19/2011 05:53 PM, Rajesh kumar wrote: >> >>> > > > > >> >>> > > > > Dear All, >> >>> > > > > >> >>> > > > > I have connected to unix server of the lab through >> >>> > > > > ssh/xming/x11. I can run open >> >>> phenix and CCP4 GUI. >> >>> > > > > >> >>> > > > > I am trying to adxv to see images but I am unable to do so. >> >>> > > > > >> >>> > > > > I have got two files adxv and adxv.i686FC2 sitting in my >> >>> > > > > work/adxv/. >> >>> > > > > >> >>> > > > > when i run adxv in bash >> >>> > > > > bash: adxv: command not found >> >>> > > > > >> >>> > > > > >> >>> > > > > >> >>> > > > > when i run ./adxv in bash >> >>> > > > > $ ./adxv /home/raj/work/wen/pin8/pin8_1_001.img >> >>> > > > > (standard_in) 1: parse error >> >>> > > > > (standard_in) 1: parse error >> >>> > > > > (standard_in) 1: parse error >> >>> > > > > beam_center x = pixels , mm >> >>> > > > > beam_center y = pixels , mm >> >>> > > > > distance = mm >> >>> > > > > overload = counts >> >>> > > > > pixelsize = 0.172 mm >> >>> > > > > wavelength = Angstroem >> >>> > > > > >> >>> > > > > ./adxv: line 39: adxv.i686FC2_static: command not found >> >>> > > > > >> >>> > > > > when i do >> >>> > > > > $ ./adxv.i686FC2_static /home/raj/work/wen/pin8/pin8_1_001.img >> >>> > > > > >> >>> > > > > -X11TransSocketINETConnect() cnat get address for >> >>> > > > > loaclhost:6011: name or service >> >>> not known >> >>> > > > > error: cannot open display >> >>> > > > > >> >>> > > > > I cant use Nxclient. >> >>> > > > > >> >>> > > > > Thanks >> >>> > > > > Raj >> >>> > > > > >> >>> > > > >> >>> > > > - -- >> >>> > > > Dr Tim Gruene >> >>> > > > Institut fuer anorganische Chemie >> >>> > > > Tammannstr. 4 >> >>> > > > D-37077 Goettingen >> >>> > > > >> > >> >> - -- >> - -- >> Dr Tim Gruene >> Institut fuer anorganische Chemie >> Tammannstr. 4 >> D-37077 Goettingen >> >> GPG Key ID = A46BEE1A >> >> -----BEGIN PGP SIGNATURE----- >> Version: GnuPG v1.4.10 (GNU/Linux) >> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ >> >> iD8DBQFOy6ZnUxlJ7aRr7hoRAkD3AJ0VRmtj8Pn6RGZAX3u/PxKwiciQpQCg8W+U >> tV2tzFimkaeI8dZu0Nj1FxE= >> =EztH >> -----END PGP SIGNATURE----- >
