-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Dear Rajesh,
are you saying that the computer you are sitting in front of is a windows computer? Are you sure you have been using CCP4 and phenix through an ssh-connection and not the respective windows-binaries? I am not familiar with windows and the possible existence of X11-clients, but I would think that most suggestions to you assumed that your client computer was also a linux-machine. Cheers, Tim On 11/22/2011 02:27 PM, Rajesh kumar wrote: > > I don't know if I need that installed on my windows computer terminal.On the > server also I could run adxv. Thought of using other ccp4 utilities. > Thanks for everyone for the help. I give up. > Regards,Rajesh > >> Date: Mon, 21 Nov 2011 11:36:14 -0500 >> From: ber...@upstate.edu >> Subject: Re: [ccp4bb] adxv >> To: CCP4BB@JISCMAIL.AC.UK >> >> yum install lesstif ? >> >> but wouldn't the motif stuff be required for the X-server, i.e. your >> terminal, not for the >> server running adxv? >> >> Rajesh kumar wrote: >>> Dear Mark, >>> >>> $ locate XKeysymDB - didnt come with any thing suggests probably openmotif >>> lib is not >>> installed. >>> I linux server has Fedora and I am using latest version of Adxv so details >>> on the sbgrid >>> suggest its same problem. >>> >>> So how would I fix this. >>> >>> Thanks for your time. >>> >>> Regards >>> Rajesh >>> >>> >>> > Date: Sun, 20 Nov 2011 23:18:32 +0000 >>> > Subject: Re: [ccp4bb] adxv >>> > From: mark.x.bro...@gmail.com >>> > To: ccp4...@hotmail.com >>> > CC: CCP4BB@jiscmail.ac.uk >>> > >>> > Dear Rajesh, >>> > Are you using the Openmotif library? If so, do you >>> > have an XKeysymDB file installed? >>> > In as shell, issue: >>> > $ locate XKeysymDB >>> > You may need to symlink it to /usr/X11R6/lib/X11/XKeysymDB if it is >>> > elsewhere [1]. >>> > I suspect you're not the only one to have seen this [2]. >>> > >>> > I hope this helps. >>> > >>> > Mark >>> > [1] >>> ftp://ftp.parallelgeo.com/SPW_Products/Linux/Current_Release/ReadMe_for_recent_Linux_distributions.txt >>> > [2] http://sbgrid.org/news/newsletters/2009/06 (search for the string >>> "adxv") >>> > >>> > >>> > On 20 November 2011 19:45, Rajesh kumar <ccp4...@hotmail.com> wrote: >>> > > >>> > > Dear Tim, >>> > > Thanks. Your suggestion of adding to PATH works and its not completely >>> functional may >>> be due to the Ximg/ssh or some thing to do with display. >>> > > All three windows opened but couldn't open any image as it didn't >>> display in the list >>> of autoload window. Pattern shows *.0. >>> > > >>> > > $adxv pin8_1_180.img >>> > > >>> > > (standard_in) 1: parse error >>> > > (standard_in) 1: parse error >>> > > (standard_in) 1: parse error >>> > > beam_center x = pixels , mm >>> > > beam_center y = pixels , mm >>> > > distance = mm >>> > > overload = counts >>> > > pixelsize = 0.172 mm >>> > > wavelength = Angstroem >>> > > Adxv Version 1.9.4-beta >>> > > Copyright (C) 1994-2007 by Andrew Arvai, Area Detector Systems >>> Corporation >>> > > Using 24-bit TrueColor visual >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfActivate >>> > > Warning: ... found while parsing ':<Key>osfActivate: >>> ManagerParentActivate()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfBeginLine >>> > > Warning: ... found while parsing ':<Key>osfBeginLine: >>> ManagerGadgetTraverseHome()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: osfHelp >>> > > Warning: ... found while parsing ':<Key>osfHelp: ManagerGadgetHelp()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfActivate >>> > > Warning: ... found while parsing ':<Key>osfActivate: >>> ManagerParentActivate()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfActivate >>> > > Warning: ... found while parsing ':<Key>osfActivate: >>> PrimitiveParentActivate()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: osfHelp >>> > > Warning: ... found while parsing ':<Key>osfHelp: Help()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfActivate >>> > > Warning: ... found while parsing ':<Key>osfActivate: >>> PrimitiveParentActivate()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: osfCancel >>> > > Warning: ... found while parsing ':<Key>osfCancel: MenuEscape()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: osfSelect >>> > > Warning: ... found while parsing ':<Key>osfSelect: ArmAndActivate()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfActivate >>> > > Warning: ... found while parsing ':<Key>osfActivate: >>> PrimitiveParentActivate()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: Locale not supported for XmbTextListToTextProperty >>> > > Warning: Cannot convert XmString to compound text >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfPrimaryPaste >>> > > Warning: ... found while parsing ':m >>> <Key>osfPrimaryPaste:cut-primary()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfActivate >>> > > Warning: ... found while parsing ':<Key>osfActivate: >>> PrimitiveParentActivate()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfActivate >>> > > Warning: ... found while parsing ':<Key>osfActivate: >>> PrimitiveParentActivate()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: osfSelect >>> > > Warning: ... found while parsing ':<Key>osfSelect: ArmAndActivate()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfPrimaryPaste >>> > > Warning: ... found while parsing ':m >>> <Key>osfPrimaryPaste:cut-primary()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: osfSelect >>> > > Warning: ... found while parsing ':<Key>osfSelect: >>> ManagerGadgetSelect()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: osfSelect >>> > > Warning: ... found while parsing ':<Key>osfSelect: >>> MenuBarGadgetSelect()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfActivate >>> > > Warning: ... found while parsing ':<Key>osfActivate: >>> ManagerParentActivate()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: osfHelp >>> > > Warning: ... found while parsing ':<Key>osfHelp: MenuHelp()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfActivate >>> > > Warning: ... found while parsing ':<Key>osfActivate: >>> PrimitiveParentActivate()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfActivate >>> > > Warning: ... found while parsing ':<Key>osfActivate: DrawingAreaInput() >>> ManagerParentActivate()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: osfUp >>> > > Warning: ... found while parsing ':<Key>osfUp: DrawingAreaInput() >>> ManagerGadgetTraverseUp()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: osfSelect >>> > > Warning: ... found while parsing ':<Key>osfSelect: KeySelect()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: osfSelect >>> > > Warning: ... found while parsing ':<Key>osfSelect: KeySelect()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: osfCancel >>> > > Warning: ... found while parsing '<Key>osfCancel: MenuEscape()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfBeginLine >>> > > Warning: ... found while parsing ':s c <Key>osfBeginLine: >>> ListBeginDataExtend()' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: translation table syntax error: Unknown keysym name: >>> osfBeginLine >>> > > Warning: ... found while parsing ':c <Key>osfBeginLine: >>> ActionGrab(SWTopLine)' >>> > > Warning: String to TranslationTable conversion encountered errors >>> > > Warning: Locale not supported for XmbTextListToTextProperty >>> > > Warning: Cannot convert XmString to compound text >>> > > Warning: Locale not supported for XmbTextListToTextProperty >>> > > Warning: Cannot convert XmString to compound text >>> > > No such file: 0.172 >>> > > >>> > > > Date: Sat, 19 Nov 2011 22:27:25 +0100 >>> > > > From: t...@shelx.uni-ac.gwdg.de >>> > > > To: ccp4...@hotmail.com >>> > > > CC: CCP4BB@JISCMAIL.AC.UK >>> > > > Subject: Re: [ccp4bb] adxv >>> > > > >>> > > > -----BEGIN PGP SIGNED MESSAGE----- >>> > > > Hash: SHA1 >>> > > > >>> > > > Dear Raj, >>> > > > >>> > > > your first two error messages are because your 'current working >>> > > > directory' is not part of your bash's PATH variable. As you login, >>> type >>> > > > export PATH=$PATH:/full/path/to/your/work/adxv >>> > > > then run adxv. >>> > > > >>> > > > I am not sure whether this will prevent the last error to occur, but >>> > > > since you can run other graphical programs there is a fair chance. >>> > > > >>> > > > Cheers, >>> > > > Tim >>> > > > >>> > > > On 11/19/2011 05:53 PM, Rajesh kumar wrote: >>> > > > > >>> > > > > Dear All, >>> > > > > >>> > > > > I have connected to unix server of the lab through ssh/xming/x11. >>> I can run open >>> phenix and CCP4 GUI. >>> > > > > >>> > > > > I am trying to adxv to see images but I am unable to do so. >>> > > > > >>> > > > > I have got two files adxv and adxv.i686FC2 sitting in my >>> work/adxv/. >>> > > > > >>> > > > > when i run adxv in bash >>> > > > > bash: adxv: command not found >>> > > > > >>> > > > > >>> > > > > >>> > > > > when i run ./adxv in bash >>> > > > > $ ./adxv /home/raj/work/wen/pin8/pin8_1_001.img >>> > > > > (standard_in) 1: parse error >>> > > > > (standard_in) 1: parse error >>> > > > > (standard_in) 1: parse error >>> > > > > beam_center x = pixels , mm >>> > > > > beam_center y = pixels , mm >>> > > > > distance = mm >>> > > > > overload = counts >>> > > > > pixelsize = 0.172 mm >>> > > > > wavelength = Angstroem >>> > > > > >>> > > > > ./adxv: line 39: adxv.i686FC2_static: command not found >>> > > > > >>> > > > > when i do >>> > > > > $ ./adxv.i686FC2_static /home/raj/work/wen/pin8/pin8_1_001.img >>> > > > > >>> > > > > -X11TransSocketINETConnect() cnat get address for loaclhost:6011: >>> name or service >>> not known >>> > > > > error: cannot open display >>> > > > > >>> > > > > I cant use Nxclient. >>> > > > > >>> > > > > Thanks >>> > > > > Raj >>> > > > > >>> > > > >>> > > > - -- >>> > > > Dr Tim Gruene >>> > > > Institut fuer anorganische Chemie >>> > > > Tammannstr. 4 >>> > > > D-37077 Goettingen >>> > > > > - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.10 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFOy6ZnUxlJ7aRr7hoRAkD3AJ0VRmtj8Pn6RGZAX3u/PxKwiciQpQCg8W+U tV2tzFimkaeI8dZu0Nj1FxE= =EztH -----END PGP SIGNATURE-----
