Dear Tim,
Yes, I have windows 7 computer and use ccp4 and phenix through xming/putty and
I run them over linux lab computer.Sorry if I have confused you all with
insufficient information.On the lab linux system, I installed everything you
suggested in BASH and it works but not completely.Core manager kind of not
interested to look in to it and I dont know much to understand everything you
nice people saying here.So instead I used idiffdisp and it opens the image. But
wanted adxv to work thats all.
ThanksRaj
> Date: Tue, 22 Nov 2011 14:41:00 +0100
> From: t...@shelx.uni-ac.gwdg.de
> To: ccp4...@hotmail.com
> CC: CCP4BB@JISCMAIL.AC.UK
> Subject: Re: [ccp4bb] adxv
>
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
>
> Dear Rajesh,
>
> are you saying that the computer you are sitting in front of is a
> windows computer?
> Are you sure you have been using CCP4 and phenix through an
> ssh-connection and not the respective windows-binaries?
>
> I am not familiar with windows and the possible existence of
> X11-clients, but I would think that most suggestions to you assumed that
> your client computer was also a linux-machine.
>
> Cheers,
> Tim
>
> On 11/22/2011 02:27 PM, Rajesh kumar wrote:
> >
> > I don't know if I need that installed on my windows computer terminal.On
> > the server also I could run adxv. Thought of using other ccp4 utilities.
> > Thanks for everyone for the help. I give up.
> > Regards,Rajesh
> >
> >> Date: Mon, 21 Nov 2011 11:36:14 -0500
> >> From: ber...@upstate.edu
> >> Subject: Re: [ccp4bb] adxv
> >> To: CCP4BB@JISCMAIL.AC.UK
> >>
> >> yum install lesstif ?
> >>
> >> but wouldn't the motif stuff be required for the X-server, i.e. your
> >> terminal, not for the
> >> server running adxv?
> >>
> >> Rajesh kumar wrote:
> >>> Dear Mark,
> >>>
> >>> $ locate XKeysymDB - didnt come with any thing suggests probably
> >>> openmotif lib is not
> >>> installed.
> >>> I linux server has Fedora and I am using latest version of Adxv so
> >>> details on the sbgrid
> >>> suggest its same problem.
> >>>
> >>> So how would I fix this.
> >>>
> >>> Thanks for your time.
> >>>
> >>> Regards
> >>> Rajesh
> >>>
> >>>
> >>> > Date: Sun, 20 Nov 2011 23:18:32 +0000
> >>> > Subject: Re: [ccp4bb] adxv
> >>> > From: mark.x.bro...@gmail.com
> >>> > To: ccp4...@hotmail.com
> >>> > CC: CCP4BB@jiscmail.ac.uk
> >>> >
> >>> > Dear Rajesh,
> >>> > Are you using the Openmotif library? If so, do you
> >>> > have an XKeysymDB file installed?
> >>> > In as shell, issue:
> >>> > $ locate XKeysymDB
> >>> > You may need to symlink it to /usr/X11R6/lib/X11/XKeysymDB if it is
> >>> > elsewhere [1].
> >>> > I suspect you're not the only one to have seen this [2].
> >>> >
> >>> > I hope this helps.
> >>> >
> >>> > Mark
> >>> > [1]
> >>> ftp://ftp.parallelgeo.com/SPW_Products/Linux/Current_Release/ReadMe_for_recent_Linux_distributions.txt
> >>> > [2] http://sbgrid.org/news/newsletters/2009/06 (search for the string
> >>> "adxv")
> >>> >
> >>> >
> >>> > On 20 November 2011 19:45, Rajesh kumar <ccp4...@hotmail.com> wrote:
> >>> > >
> >>> > > Dear Tim,
> >>> > > Thanks. Your suggestion of adding to PATH works and its not
> >>> completely functional may
> >>> be due to the Ximg/ssh or some thing to do with display.
> >>> > > All three windows opened but couldn't open any image as it didn't
> >>> display in the list
> >>> of autoload window. Pattern shows *.0.
> >>> > >
> >>> > > $adxv pin8_1_180.img
> >>> > >
> >>> > > (standard_in) 1: parse error
> >>> > > (standard_in) 1: parse error
> >>> > > (standard_in) 1: parse error
> >>> > > beam_center x = pixels , mm
> >>> > > beam_center y = pixels , mm
> >>> > > distance = mm
> >>> > > overload = counts
> >>> > > pixelsize = 0.172 mm
> >>> > > wavelength = Angstroem
> >>> > > Adxv Version 1.9.4-beta
> >>> > > Copyright (C) 1994-2007 by Andrew Arvai, Area Detector Systems
> >>> Corporation
> >>> > > Using 24-bit TrueColor visual
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfActivate
> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
> >>> ManagerParentActivate()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfBeginLine
> >>> > > Warning: ... found while parsing ':<Key>osfBeginLine:
> >>> ManagerGadgetTraverseHome()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name: osfHelp
> >>> > > Warning: ... found while parsing ':<Key>osfHelp: ManagerGadgetHelp()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfActivate
> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
> >>> ManagerParentActivate()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfActivate
> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
> >>> PrimitiveParentActivate()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name: osfHelp
> >>> > > Warning: ... found while parsing ':<Key>osfHelp: Help()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfActivate
> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
> >>> PrimitiveParentActivate()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfCancel
> >>> > > Warning: ... found while parsing ':<Key>osfCancel: MenuEscape()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfSelect
> >>> > > Warning: ... found while parsing ':<Key>osfSelect: ArmAndActivate()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfActivate
> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
> >>> PrimitiveParentActivate()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: Locale not supported for XmbTextListToTextProperty
> >>> > > Warning: Cannot convert XmString to compound text
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfPrimaryPaste
> >>> > > Warning: ... found while parsing ':m
> >>> <Key>osfPrimaryPaste:cut-primary()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfActivate
> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
> >>> PrimitiveParentActivate()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfActivate
> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
> >>> PrimitiveParentActivate()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfSelect
> >>> > > Warning: ... found while parsing ':<Key>osfSelect: ArmAndActivate()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfPrimaryPaste
> >>> > > Warning: ... found while parsing ':m
> >>> <Key>osfPrimaryPaste:cut-primary()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfSelect
> >>> > > Warning: ... found while parsing ':<Key>osfSelect:
> >>> ManagerGadgetSelect()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfSelect
> >>> > > Warning: ... found while parsing ':<Key>osfSelect:
> >>> MenuBarGadgetSelect()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfActivate
> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
> >>> ManagerParentActivate()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name: osfHelp
> >>> > > Warning: ... found while parsing ':<Key>osfHelp: MenuHelp()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfActivate
> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
> >>> PrimitiveParentActivate()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfActivate
> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
> >>> DrawingAreaInput()
> >>> ManagerParentActivate()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name: osfUp
> >>> > > Warning: ... found while parsing ':<Key>osfUp: DrawingAreaInput()
> >>> ManagerGadgetTraverseUp()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfSelect
> >>> > > Warning: ... found while parsing ':<Key>osfSelect: KeySelect()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfSelect
> >>> > > Warning: ... found while parsing ':<Key>osfSelect: KeySelect()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfCancel
> >>> > > Warning: ... found while parsing '<Key>osfCancel: MenuEscape()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfBeginLine
> >>> > > Warning: ... found while parsing ':s c <Key>osfBeginLine:
> >>> ListBeginDataExtend()'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: translation table syntax error: Unknown keysym name:
> >>> osfBeginLine
> >>> > > Warning: ... found while parsing ':c <Key>osfBeginLine:
> >>> ActionGrab(SWTopLine)'
> >>> > > Warning: String to TranslationTable conversion encountered errors
> >>> > > Warning: Locale not supported for XmbTextListToTextProperty
> >>> > > Warning: Cannot convert XmString to compound text
> >>> > > Warning: Locale not supported for XmbTextListToTextProperty
> >>> > > Warning: Cannot convert XmString to compound text
> >>> > > No such file: 0.172
> >>> > >
> >>> > > > Date: Sat, 19 Nov 2011 22:27:25 +0100
> >>> > > > From: t...@shelx.uni-ac.gwdg.de
> >>> > > > To: ccp4...@hotmail.com
> >>> > > > CC: CCP4BB@JISCMAIL.AC.UK
> >>> > > > Subject: Re: [ccp4bb] adxv
> >>> > > >
> >>> > > > -----BEGIN PGP SIGNED MESSAGE-----
> >>> > > > Hash: SHA1
> >>> > > >
> >>> > > > Dear Raj,
> >>> > > >
> >>> > > > your first two error messages are because your 'current working
> >>> > > > directory' is not part of your bash's PATH variable. As you login,
> >>> type
> >>> > > > export PATH=$PATH:/full/path/to/your/work/adxv
> >>> > > > then run adxv.
> >>> > > >
> >>> > > > I am not sure whether this will prevent the last error to occur,
> >>> but
> >>> > > > since you can run other graphical programs there is a fair chance.
> >>> > > >
> >>> > > > Cheers,
> >>> > > > Tim
> >>> > > >
> >>> > > > On 11/19/2011 05:53 PM, Rajesh kumar wrote:
> >>> > > > >
> >>> > > > > Dear All,
> >>> > > > >
> >>> > > > > I have connected to unix server of the lab through
> >>> ssh/xming/x11. I can run open
> >>> phenix and CCP4 GUI.
> >>> > > > >
> >>> > > > > I am trying to adxv to see images but I am unable to do so.
> >>> > > > >
> >>> > > > > I have got two files adxv and adxv.i686FC2 sitting in my
> >>> work/adxv/.
> >>> > > > >
> >>> > > > > when i run adxv in bash
> >>> > > > > bash: adxv: command not found
> >>> > > > >
> >>> > > > >
> >>> > > > >
> >>> > > > > when i run ./adxv in bash
> >>> > > > > $ ./adxv /home/raj/work/wen/pin8/pin8_1_001.img
> >>> > > > > (standard_in) 1: parse error
> >>> > > > > (standard_in) 1: parse error
> >>> > > > > (standard_in) 1: parse error
> >>> > > > > beam_center x = pixels , mm
> >>> > > > > beam_center y = pixels , mm
> >>> > > > > distance = mm
> >>> > > > > overload = counts
> >>> > > > > pixelsize = 0.172 mm
> >>> > > > > wavelength = Angstroem
> >>> > > > >
> >>> > > > > ./adxv: line 39: adxv.i686FC2_static: command not found
> >>> > > > >
> >>> > > > > when i do
> >>> > > > > $ ./adxv.i686FC2_static /home/raj/work/wen/pin8/pin8_1_001.img
> >>> > > > >
> >>> > > > > -X11TransSocketINETConnect() cnat get address for
> >>> loaclhost:6011: name or service
> >>> not known
> >>> > > > > error: cannot open display
> >>> > > > >
> >>> > > > > I cant use Nxclient.
> >>> > > > >
> >>> > > > > Thanks
> >>> > > > > Raj
> >>> > > > >
> >>> > > >
> >>> > > > - --
> >>> > > > Dr Tim Gruene
> >>> > > > Institut fuer anorganische Chemie
> >>> > > > Tammannstr. 4
> >>> > > > D-37077 Goettingen
> >>> > > >
> >
>
> - --
> - --
> Dr Tim Gruene
> Institut fuer anorganische Chemie
> Tammannstr. 4
> D-37077 Goettingen
>
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