PIR is fairly similar to Fasta, from addled memory the format is... >protein name; ----empty line---- MPREIL...rest of amino acid sequence with an optional asterisk to mark the sequence end.
Tony Sent from my iPhone On 12 Aug 2011, at 09:14, "Phil Evans" <p...@mrc-lmb.cam.ac.uk> wrote: > Can anyone get this server to work? For me it keeps complaining that my > sequence file is not a PIR file. The file looks OK to me, but I've never > really understood what a PIR file is > > Phil > > On 12 Aug 2011, at 01:39, Kevin Jin wrote: > >> >> Should we really have some crystallographers to review and qc those >> structures before the formal releasing? JCSG has set a very good mechanism >> for this issue. >> >> There is a sever for self check. >> >> http://smb.slac.stanford.edu/jcsg/QC/ >> >> >> >> >> >> >> On Thu, Aug 11, 2011 at 4:58 PM, Jacob Keller >> <j-kell...@fsm.northwestern.edu> wrote: >> I think they fudged the data in this paper... >> >> JPK >> >> On Thu, Aug 11, 2011 at 6:30 PM, David Schuller <dj...@cornell.edu> wrote: >>> link: http://iai.asm.org/cgi/reprint/IAI.05661-11v1 >>> >>> Ferric C. Fang & Arturo Casadevall >>> Retracted Science and the Retraction Index >>> Infec. Immun. doi:10.1128/IAI.05661-11 >>> >>> Abstract: Articles may be retracted when their findings are no longer >>> considered trustworthy due to scientific misconduct or error, they >>> plagiarize previously published work, or are found to violate ethical >>> guidelines. Using a novel measure that we call the “retraction index,” we >>> found that the frequency of retraction varies among journals and shows a >>> strong correlation with the journal impact factor. >>> ... >>> >>> (with special attention to Figure 1, Retraction Index vs. Impact Factor) >>> >>> >>> -- >>> ======================================================================= >>> All Things Serve the Beam >>> ======================================================================= >>> David J. Schuller >>> modern man in a post-modern world >>> MacCHESS, Cornell University >>> schul...@cornell.edu >>> >> >> >> >> -- >> ******************************************* >> Jacob Pearson Keller >> Northwestern University >> Medical Scientist Training Program >> cel: 773.608.9185 >> email: j-kell...@northwestern.edu >> ******************************************* >>
