>I’m trying to prepare an alignment figure of 2 proteins that highlight >conserved and similar residues and probably secondary structures; I will >greatly >appreciate it if anybody can recommend a software that I can use. >Thanks, Mohd
For those who like TeX, TeXshade is incredibly powerful, and produces beautiful alignment figures. http://www.ctan.org/tex-archive/help/Catalogue/entries/texshade.html James -- Dr. James W. Murray David Phillips Research Fellow Division on Molecular Biosciences Imperial College, LONDON Tel: +44 (0)20 759 48895 ________________________________________ From: CCP4 bulletin board [ccp...@jiscmail.ac.uk] On Behalf Of Victor Alves [vdal...@fmv.utl.pt] Sent: Sunday, May 23, 2010 12:41 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Alignment software Hi Mohd You can also check: ALINE (An Extensible WYSIWYG Protein Sequence Alignment Editor for Publication Quality Figures) http://crystal.bcs.uwa.edu.au/px/charlie/software/aline/ It’s quite nice and has a lot of potential, although unfortunately it seems that development of the software as stopped :-( Cheers Victor Alves From: CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] On Behalf Of Salameh, Mohd A., Ph.D. Sent: sexta-feira, 21 de Maio de 2010 16:11 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Alignment software Dear All, I’m trying to prepare an alignment figure of 2 proteins that highlight conserved and similar residues and probably secondary structures; I will greatly appreciate it if anybody can recommend a software that I can use. Thanks, Mohd
