Hi Mark, Yes, it must be as you say. But I don't want to maintain two fink installations side-by-side, I'll better wait for a proper fix and use the scripts in the mean time.
Cheerio,
Miguel
Le 26 déc. 2009 à 16:57, Mark Del Campo a écrit :
> Miguel,
>
> I'm pretty sure you need a 32-bit fink installation for this workaround to
> work. You have to source /sw/bin/init.sh.
>
> Best,
>
> Mark
>
> On 12/26/09 6:51 AM, Miguel Ortiz Lombardia wrote:
>> Le 26 déc. 2009 à 09:51, Anastassis Perrakis a écrit :
>>
>>
>>> Dear all,
>>>
>>> A couple of people have pointed out problems when installing the ARP/wARP
>>> CCP4i GUI over 64-bit fink installations
>>> of CCP4, in Mac OSX 10.6 Snow Leopard. Although I am not confident we
>>> understand the problem 100%, it appears
>>> to be genuine, and most likely related to 64-bit versions of bltwish.
>>>
>>> With the kind help of Felix Frollow and - you would not have guessed - Bill
>>> Scott, it appears that the following workaround is valid:
>>>
>>> sudo /bin/bash {or /bin/tcsh, or /bin/zsh, should not matter}
>>> source /sw/bin/init.csh {or .sh. that the fink setup, you need to do that
>>> steo}
>>> ccp4i
>>> {use the gui to uninstall previous versions and install the new one}
>>>
>>> Then you can exit, and from a new terminal you can go on using your
>>> installation as a normal user.
>>>
>>> Note, that this installation problem only affects the GUI, and you can
>>> anyway use the scripts
>>> (e.g. auto_tracing.sh) and use for e.g. ligand fitting the functionality of
>>> arpnavigator, or use a 32-bit installation.
>>>
>>> Best wishes to all -
>>>
>>> Tassos
>>>
>>> On Dec 24, 2009, at 20:29, Victor Lamzin wrote:
>>>
>>>
>>>> Dear All,
>>>>
>>>> We are happy to announce the release of ARP/wARP version 7.1.
>>>>
>>>> Please visit http://www.arp-warp.org for details and software download.
>>>>
>>>> The major implementations and improvements are:
>>>>
>>>> • A prototype of the molecular graphics ARP/wARP front-end, allowing the
>>>> display of molecules and electron densities.
>>>> • A prototype version of the new module for building poly-nucleotides
>>>> (DNA or RNA).
>>>> • Improved and faster protein chain tracing with higher performance at
>>>> lower resolution.
>>>> • The loop building as well as helix/strand building are now also
>>>> inherent parts of protein model building, resulting in enhanced model
>>>> completeness.
>>>> • Refinement procedures during automated model building have been
>>>> enhanced in the new versions of our preferred refinement engine, REFMAC,
>>>> notably including the implementation of 'conditional restraints'.
>>>> • Direct use of experimental single-wavelength anomalous diffraction
>>>> data (SAD) during model building is now also possible.
>>>> • Improved performance of automated ligand building.
>>>> • Supported computer platforms are Mac powerpc, Mac Intel and Linux
>>>> (including 32 and 64-bit versions and itanium).
>>>>
>>>> Merry Xmas and Happy New Year!
>>>>
>>>> Victor and Tassos on behalf of the ARP/wARP developers' team.
>>>>
>> Dear Tassos,
>>
>> Unfortunately, it does not seem to be a general cure. I get the same error
>> as before:
>>
>> [...@pmacmol2~]
>> (A)> sudo /bin/bash
>> [r...@pmacmol2~]
>> (A)> source /sw64/bin/init.sh
>> [r...@pmacmol2~]
>> (A)> ccp4i
>> Top level CCP4 directory is /sw64/share/xtal/ccp4-6.1.2
>> Using CCP4 programs from /sw64/share/xtal/ccp4-6.1.2/bin
>> UnpackTaskArchive: uncompress failed to create
>> "/tmp/mol/install_ARP_wARP_CCP4I6/ARP_wARP_CCP4I6.tar"
>> ExamineTaskArchive: failed to unpack temporary copy of
>> /usr/local/arp_warp_7.0.1/ARP_wARP_CCP4I6.tar.gz
>> UnpackTaskArchive: uncompress failed to create
>> "/tmp/mol/install_ARP_wARP_CCP4I6/ARP_wARP_CCP4I6.tar"
>> ExamineTaskArchive: failed to unpack temporary copy of
>> /usr/local/arp_warp_7.0.1/ARP_wARP_CCP4I6.tar.gz
>>
>> And the task is not installed.
>>
>> So, it seems that for the time being we will be using the scripts...
>>
>> Thank you for trying!
>>
>> Best regards,
>>
>>
>> -- Miguel
>>
>> Architecture et Fonction des Macromolécules Biologiques (UMR6098)
>> CNRS, Universités d'Aix-Marseille I& II
>> Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France
>> Tel: +33(0) 491 82 55 93
>> Fax: +33(0) 491 26 67 20
>> e-mail: miguel.ortiz-lombar...@afmb.univ-mrs.fr
>> Web: http://www.pangea.org/mol/spip.php?rubrique2
>>
>>
>>
>>
>>
>>
>
> --
> This message has been scanned for viruses and
> dangerous content by MailScanner, and is
> believed to be clean.
>
-- Miguel
Architecture et Fonction des Macromolécules Biologiques (UMR6098)
CNRS, Universités d'Aix-Marseille I & II
Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France
Tel: +33(0) 491 82 55 93
Fax: +33(0) 491 26 67 20
e-mail: miguel.ortiz-lombar...@afmb.univ-mrs.fr
Web: http://www.pangea.org/mol/spip.php?rubrique2
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