Just realized that I had tried before installing ARP/wARP 7.1 (it was 7.0.1)
Unfortunately, also to confirm that the same error appears after installing 7.1
As others observed, the installation of 7.1 reports that the GUI has been
succesfully installed. But nothing has changed in $CCP4I_TOP/tasks and the task
is not there.
Best regards,
Miguel
Le 26 déc. 2009 à 13:51, Miguel Ortiz Lombardia a écrit :
> Le 26 déc. 2009 à 09:51, Anastassis Perrakis a écrit :
>
>> Dear all,
>>
>> A couple of people have pointed out problems when installing the ARP/wARP
>> CCP4i GUI over 64-bit fink installations
>> of CCP4, in Mac OSX 10.6 Snow Leopard. Although I am not confident we
>> understand the problem 100%, it appears
>> to be genuine, and most likely related to 64-bit versions of bltwish.
>>
>> With the kind help of Felix Frollow and - you would not have guessed - Bill
>> Scott, it appears that the following workaround is valid:
>>
>> sudo /bin/bash {or /bin/tcsh, or /bin/zsh, should not matter}
>> source /sw/bin/init.csh {or .sh. that the fink setup, you need to do that
>> steo}
>> ccp4i
>> {use the gui to uninstall previous versions and install the new one}
>>
>> Then you can exit, and from a new terminal you can go on using your
>> installation as a normal user.
>>
>> Note, that this installation problem only affects the GUI, and you can
>> anyway use the scripts
>> (e.g. auto_tracing.sh) and use for e.g. ligand fitting the functionality of
>> arpnavigator, or use a 32-bit installation.
>>
>> Best wishes to all -
>>
>> Tassos
>>
>> On Dec 24, 2009, at 20:29, Victor Lamzin wrote:
>>
>>> Dear All,
>>>
>>> We are happy to announce the release of ARP/wARP version 7.1.
>>>
>>> Please visit http://www.arp-warp.org for details and software download.
>>>
>>> The major implementations and improvements are:
>>>
>>> • A prototype of the molecular graphics ARP/wARP front-end, allowing the
>>> display of molecules and electron densities.
>>> • A prototype version of the new module for building poly-nucleotides
>>> (DNA or RNA).
>>> • Improved and faster protein chain tracing with higher performance at
>>> lower resolution.
>>> • The loop building as well as helix/strand building are now also
>>> inherent parts of protein model building, resulting in enhanced model
>>> completeness.
>>> • Refinement procedures during automated model building have been
>>> enhanced in the new versions of our preferred refinement engine, REFMAC,
>>> notably including the implementation of 'conditional restraints'.
>>> • Direct use of experimental single-wavelength anomalous diffraction
>>> data (SAD) during model building is now also possible.
>>> • Improved performance of automated ligand building.
>>> • Supported computer platforms are Mac powerpc, Mac Intel and Linux
>>> (including 32 and 64-bit versions and itanium).
>>>
>>> Merry Xmas and Happy New Year!
>>>
>>> Victor and Tassos on behalf of the ARP/wARP developers' team.
>
> Dear Tassos,
>
> Unfortunately, it does not seem to be a general cure. I get the same error as
> before:
>
> [...@pmacmol2~]
> (A)> sudo /bin/bash
> [r...@pmacmol2~]
> (A)> source /sw64/bin/init.sh
> [r...@pmacmol2~]
> (A)> ccp4i
> Top level CCP4 directory is /sw64/share/xtal/ccp4-6.1.2
> Using CCP4 programs from /sw64/share/xtal/ccp4-6.1.2/bin
> UnpackTaskArchive: uncompress failed to create
> "/tmp/mol/install_ARP_wARP_CCP4I6/ARP_wARP_CCP4I6.tar"
> ExamineTaskArchive: failed to unpack temporary copy of
> /usr/local/arp_warp_7.0.1/ARP_wARP_CCP4I6.tar.gz
> UnpackTaskArchive: uncompress failed to create
> "/tmp/mol/install_ARP_wARP_CCP4I6/ARP_wARP_CCP4I6.tar"
> ExamineTaskArchive: failed to unpack temporary copy of
> /usr/local/arp_warp_7.0.1/ARP_wARP_CCP4I6.tar.gz
>
> And the task is not installed.
>
> So, it seems that for the time being we will be using the scripts...
>
> Thank you for trying!
>
> Best regards,
>
>
> -- Miguel
>
> Architecture et Fonction des Macromolécules Biologiques (UMR6098)
> CNRS, Universités d'Aix-Marseille I & II
> Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France
> Tel: +33(0) 491 82 55 93
> Fax: +33(0) 491 26 67 20
> e-mail: miguel.ortiz-lombar...@afmb.univ-mrs.fr
> Web: http://www.pangea.org/mol/spip.php?rubrique2
>
>
>
>
>
-- Miguel
Architecture et Fonction des Macromolécules Biologiques (UMR6098)
CNRS, Universités d'Aix-Marseille I & II
Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France
Tel: +33(0) 491 82 55 93
Fax: +33(0) 491 26 67 20
e-mail: miguel.ortiz-lombar...@afmb.univ-mrs.fr
Web: http://www.pangea.org/mol/spip.php?rubrique2
smime.p7s
Description: S/MIME cryptographic signature
