Le 26 déc. 2009 à 09:51, Anastassis Perrakis a écrit :
> Dear all,
>
> A couple of people have pointed out problems when installing the ARP/wARP
> CCP4i GUI over 64-bit fink installations
> of CCP4, in Mac OSX 10.6 Snow Leopard. Although I am not confident we
> understand the problem 100%, it appears
> to be genuine, and most likely related to 64-bit versions of bltwish.
>
> With the kind help of Felix Frollow and - you would not have guessed - Bill
> Scott, it appears that the following workaround is valid:
>
> sudo /bin/bash {or /bin/tcsh, or /bin/zsh, should not matter}
> source /sw/bin/init.csh {or .sh. that the fink setup, you need to do that
> steo}
> ccp4i
> {use the gui to uninstall previous versions and install the new one}
>
> Then you can exit, and from a new terminal you can go on using your
> installation as a normal user.
>
> Note, that this installation problem only affects the GUI, and you can anyway
> use the scripts
> (e.g. auto_tracing.sh) and use for e.g. ligand fitting the functionality of
> arpnavigator, or use a 32-bit installation.
>
> Best wishes to all -
>
> Tassos
>
> On Dec 24, 2009, at 20:29, Victor Lamzin wrote:
>
>> Dear All,
>>
>> We are happy to announce the release of ARP/wARP version 7.1.
>>
>> Please visit http://www.arp-warp.org for details and software download.
>>
>> The major implementations and improvements are:
>>
>> • A prototype of the molecular graphics ARP/wARP front-end, allowing the
>> display of molecules and electron densities.
>> • A prototype version of the new module for building poly-nucleotides
>> (DNA or RNA).
>> • Improved and faster protein chain tracing with higher performance at
>> lower resolution.
>> • The loop building as well as helix/strand building are now also
>> inherent parts of protein model building, resulting in enhanced model
>> completeness.
>> • Refinement procedures during automated model building have been
>> enhanced in the new versions of our preferred refinement engine, REFMAC,
>> notably including the implementation of 'conditional restraints'.
>> • Direct use of experimental single-wavelength anomalous diffraction
>> data (SAD) during model building is now also possible.
>> • Improved performance of automated ligand building.
>> • Supported computer platforms are Mac powerpc, Mac Intel and Linux
>> (including 32 and 64-bit versions and itanium).
>>
>> Merry Xmas and Happy New Year!
>>
>> Victor and Tassos on behalf of the ARP/wARP developers' team.Dear Tassos, Unfortunately, it does not seem to be a general cure. I get the same error as before: [...@pmacmol2~] (A)> sudo /bin/bash [r...@pmacmol2~] (A)> source /sw64/bin/init.sh [r...@pmacmol2~] (A)> ccp4i Top level CCP4 directory is /sw64/share/xtal/ccp4-6.1.2 Using CCP4 programs from /sw64/share/xtal/ccp4-6.1.2/bin UnpackTaskArchive: uncompress failed to create "/tmp/mol/install_ARP_wARP_CCP4I6/ARP_wARP_CCP4I6.tar" ExamineTaskArchive: failed to unpack temporary copy of /usr/local/arp_warp_7.0.1/ARP_wARP_CCP4I6.tar.gz UnpackTaskArchive: uncompress failed to create "/tmp/mol/install_ARP_wARP_CCP4I6/ARP_wARP_CCP4I6.tar" ExamineTaskArchive: failed to unpack temporary copy of /usr/local/arp_warp_7.0.1/ARP_wARP_CCP4I6.tar.gz And the task is not installed. So, it seems that for the time being we will be using the scripts... Thank you for trying! Best regards, -- Miguel Architecture et Fonction des Macromolécules Biologiques (UMR6098) CNRS, Universités d'Aix-Marseille I & II Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France Tel: +33(0) 491 82 55 93 Fax: +33(0) 491 26 67 20 e-mail: miguel.ortiz-lombar...@afmb.univ-mrs.fr Web: http://www.pangea.org/mol/spip.php?rubrique2
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