The original poster may be interested in this paper from Phil Bourne's lab a few years ago which looked at the contribution of folds (among other things) by the Protein Structure Initiative, particularly Fig 5 and table 1.
http://helix-web.stanford.edu/psb04/bourne.pdf "The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures" P.E. Bourne, C.K.J. Allerston, W. Krebs, W. Li, I.N. Shindyalov, A. Godzik, I. Friedberg, T. Liu, D. Wild, S. Hwang, Z. Ghahramani, L. Chen, and J. Westbrook cheers, Andy 2009/2/26 <matthew.frank...@imclone.com>: > CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> wrote on 02/25/2009 03:08:10 > PM: > >> On Wednesday 25 February 2009 08:20:14 Jayashankar wrote: >> > Dear Folks, >> > >> > The last novel proteins fold were from the yr 2007(pdb statistics), >> > From 2007 to till date no novel fold has been identified, >> >> If you reached this conclusion by looking at the PDB web site, >> you should note that the site explains these numbers are taken from SCOP. >> The SCOP website states that the most recent update was some time in > 2007. >> >> So you would have to look elsewhere for new folds deposited since > mid-2007. >> >> > > In fact, you have to look no further than SCOP! Or should I say, pre-SCOP, > the pre-release partial classification of the latest batch of proteins from > the PDB. Here's the webpage: http://www.mrc-lmb.cam.ac.uk/agm/pre-scop/ > > This says that they're still classifying proteins deposited as recently as > Oct 2008, which is a relief to me - I was worried that SCOP had been > abandoned. > > To address the original question, here are some numbers: > > Folds in SCOP 1.71 (18 Jan 2005): 971 > Folds in SCOP 1.73 (26 Sep 2007): 1086 > Folds in pre-SCOP (Oct-ish 2008): 1392 > > We're not done finding new folds yet, folks... > > - Matt > > -- > Matthew Franklin , Ph.D. > Senior Scientist, ImClone Systems > 180 Varick Street, 6th floor > New York, NY 10014 > phone:(917)606-4116 fax:(212)645-2054 > > > > Confidentiality Note: This e-mail, and any attachment to it, contains > privileged and confidential information intended only for the use of the > individual(s) or entity named on the e-mail. If the reader of this e-mail > is not the intended recipient, or the employee or agent responsible for > delivering it to the intended recipient, you are hereby notified that > reading it is strictly prohibited. If you have received this e-mail in > error, please immediately return it to the sender and delete it from your > system. Thank you. >
